RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 PAGE1O75459 146 aa16.75■□□□□ 0.27
CCDC88B-210ENST00000494566 MX2P20592 715 aa16.75■□□□□ 0.27
CCDC88B-210ENST00000494566 GRIK1P39086 918 aa16.75■□□□□ 0.27
CCDC88B-210ENST00000494566 GPR15P49685 360 aa16.75■□□□□ 0.27
CCDC88B-210ENST00000494566 NAGLUP54802 743 aa16.75■□□□□ 0.27
CCDC88B-210ENST00000494566 CRHR2Q13324 411 aa16.75■□□□□ 0.27
CCDC88B-210ENST00000494566 PCSK7Q16549 785 aa16.75■□□□□ 0.27
CCDC88B-210ENST00000494566 ARPINQ7Z6K5 226 aa16.75■□□□□ 0.27
CCDC88B-210ENST00000494566 DMAP1Q9NPF5 467 aaPredicted RBP16.75■□□□□ 0.27
CCDC88B-210ENST00000494566 UBAP1Q9NZ09 502 aa16.75■□□□□ 0.27
CCDC88B-210ENST00000494566 NEU3Q9UQ49 428 aa16.75■□□□□ 0.27
CCDC88B-210ENST00000494566 ZNF236Q9UL36 1845 aa16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 G3V2L1 256 aa16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 DUSP11O75319 330 aaKnown RBP16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 RTN3O95197 1032 aaPredicted RBP16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 UQCRBP14927 111 aa16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 ALDH1A3P47895 512 aa16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 SLC5A3P53794 718 aa16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 CMPK2Q5EBM0 449 aa16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 TMCO4Q5TGY1 634 aa16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 OVOS1Q6IE37 1185 aa16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 RBM44Q6ZP01 1051 aaKnown RBP16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 SPATA24Q86W54 205 aa16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 SLC41A1Q8IVJ1 513 aa16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 B4GALNT2Q8NHY0 566 aa16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 RAB3IL1Q8TBN0 382 aa16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 PGAP3Q96FM1 320 aaPredicted RBP16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 TSPAN18Q96SJ8 248 aa16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 PRPF18Q99633 342 aaKnown RBP16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 CENPKQ9BS16 269 aa16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 FICDQ9BVA6 458 aa16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 SLC39A8Q9C0K1 460 aa16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 NMUR1Q9HB89 426 aa16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 CSNK1G1Q9HCP0 422 aa16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 TRMT13Q9NUP7 481 aaKnown RBP16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 NEMP2A6NFY4 417 aa16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 KLHL2O95198 593 aa16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 VAPBO95292 243 aa16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 GABRB3P28472 473 aa16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 RPS6KA3P51812 740 aa16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 PLK1P53350 603 aa16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 CNGA3Q16281 694 aa16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 PM20D1Q6GTS8 502 aa16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 ESRP1Q6NXG1 681 aaKnown RBP16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 C14orf80Q86SX3 495 aa16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 ARHGAP12Q8IWW6 846 aa16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 FBXW8Q8N3Y1 598 aa16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 LIN28AQ9H9Z2 209 aaKnown RBP16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 CYP4F12Q9HCS2 524 aa16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 GMPR2Q9P2T1 348 aaKnown RBP16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 GIT1Q9Y2X7 761 aa16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 TLL2Q9Y6L7 1015 aa16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 SCN10AQ9Y5Y9 1956 aa16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 TDRD15B5MCY1 1934 aaKnown RBP16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 MYLKQ15746 1914 aa16.74■□□□□ 0.27
CCDC88B-210ENST00000494566 ZNF195O14628 629 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 F9P00740 461 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 MS4A2Q01362 244 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 ITPRIPL1Q6GPH6 555 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 TFAP2DQ7Z6R9 452 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 SERINC5Q86VE9 423 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 ATPAF2Q8N5M1 289 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 BHLHE22Q8NFJ8 381 aaPredicted RBP16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 KCTD4Q8WVF5 259 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 TRAPPC9Q96Q05 1148 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 GATA5Q9BWX5 397 aaPredicted RBP16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 TCF7L2Q9NQB0 619 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 CROCCQ5TZA2 2017 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 C9JVG2 144 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 H3BNX3 289 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 NCAM2O15394 837 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 FKBP6O75344 327 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 ASGR1P07306 291 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 NME5P56597 212 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 FAM171BQ6P995 826 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 METTL23Q86XA0 190 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 GRIN3AQ8TCU5 1115 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 DCUN1D1Q96GG9 259 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 FCRL2Q96LA5 508 aaPredicted RBP16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 NR1H4Q96RI1 486 aaPredicted RBP16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 NMRAL1Q9HBL8 299 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 OSER1Q9NX31 292 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 ABI2Q9NYB9 513 aaPredicted RBP16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 AURKAO14965 403 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 PIGNO95427 931 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 HCAR3P49019 387 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 MGAT3Q09327 533 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 CDH17Q12864 832 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 SEPT6Q14141 434 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 FLOT2Q14254 428 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 USP10Q14694 798 aaKnown RBP16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 BTBD8Q5XKL5 378 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 DCLRE1AQ6PJP8 1040 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 TMC7Q7Z402 723 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 ZBTB46Q86UZ6 589 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 RSPH1Q8WYR4 309 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 DPF3Q92784 378 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 CMTM5Q96DZ9 223 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 ACBD6Q9BR61 282 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 PCDHAC1Q9H158 963 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms