RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 MAGEA4P43358 317 aa12.84□□□□□ -0.35
VPS52-220ENST00000493674 RGRP47804 291 aa12.84□□□□□ -0.35
VPS52-220ENST00000493674 MAXP61244 160 aa12.84□□□□□ -0.35
VPS52-220ENST00000493674 SKOR1P84550 965 aa12.84□□□□□ -0.35
VPS52-220ENST00000493674 DSC2Q02487 901 aa12.84□□□□□ -0.35
VPS52-220ENST00000493674 NSUN2Q08J23 767 aaKnown RBP eCLIP12.84□□□□□ -0.35
VPS52-220ENST00000493674 PRPSAP1Q14558 356 aa12.84□□□□□ -0.35
VPS52-220ENST00000493674 FASTKD3Q14CZ7 662 aaKnown RBP12.84□□□□□ -0.35
VPS52-220ENST00000493674 RALGPS1Q5JS13 557 aa12.84□□□□□ -0.35
VPS52-220ENST00000493674 SYCP2LQ5T4T6 812 aa12.84□□□□□ -0.35
VPS52-220ENST00000493674 UBAP2Q5T6F2 1119 aaKnown RBP12.84□□□□□ -0.35
VPS52-220ENST00000493674 TMEM215Q68D42 235 aa12.84□□□□□ -0.35
VPS52-220ENST00000493674 LEKR1Q6ZMV7 388 aa12.84□□□□□ -0.35
VPS52-220ENST00000493674 EP400NLQ6ZTU2 488 aa12.84□□□□□ -0.35
VPS52-220ENST00000493674 CENPUQ71F23 418 aa12.84□□□□□ -0.35
VPS52-220ENST00000493674 HDXQ7Z353 690 aa12.84□□□□□ -0.35
VPS52-220ENST00000493674 IQCKQ8N0W5 287 aa12.84□□□□□ -0.35
VPS52-220ENST00000493674 AHI1Q8N157 1196 aa12.84□□□□□ -0.35
VPS52-220ENST00000493674 PDIK1LQ8N165 341 aa12.84□□□□□ -0.35
VPS52-220ENST00000493674 BBS5Q8N3I7 341 aa12.84□□□□□ -0.35
VPS52-220ENST00000493674 CPA6Q8N4T0 437 aa12.84□□□□□ -0.35
VPS52-220ENST00000493674 WFIKKN2Q8TEU8 576 aa12.84□□□□□ -0.35
VPS52-220ENST00000493674 VOPP1Q96AW1 172 aa12.84□□□□□ -0.35
VPS52-220ENST00000493674 LRRC39Q96DD0 335 aa12.84□□□□□ -0.35
VPS52-220ENST00000493674 MRGPRX2Q96LB1 330 aa12.84□□□□□ -0.35
VPS52-220ENST00000493674 SIGLEC10Q96LC7 697 aa12.84□□□□□ -0.35
VPS52-220ENST00000493674 NSMCE3Q96MG7 304 aa12.84□□□□□ -0.35
VPS52-220ENST00000493674 CINPQ9BW66 212 aaPredicted RBP12.84□□□□□ -0.35
VPS52-220ENST00000493674 SEMA4AQ9H3S1 761 aa12.84□□□□□ -0.35
VPS52-220ENST00000493674 HAUS2Q9NVX0 235 aa12.84□□□□□ -0.35
VPS52-220ENST00000493674 GOLGA6AQ9NYA3 693 aa12.84□□□□□ -0.35
VPS52-220ENST00000493674 NINJ2Q9NZG7 142 aa12.84□□□□□ -0.35
VPS52-220ENST00000493674 PLXNA2O75051 1894 aa12.84□□□□□ -0.35
VPS52-220ENST00000493674 RIPK2O43353 540 aa12.83□□□□□ -0.36
VPS52-220ENST00000493674 SMAD6O43541 496 aaKnown RBP12.83□□□□□ -0.36
VPS52-220ENST00000493674 BANF1O75531 89 aa12.83□□□□□ -0.36
VPS52-220ENST00000493674 TTC4O95801 387 aa12.83□□□□□ -0.36
VPS52-220ENST00000493674 MT-CO1P00395 513 aa12.83□□□□□ -0.36
VPS52-220ENST00000493674 ABHD2P08910 425 aa12.83□□□□□ -0.36
VPS52-220ENST00000493674 NUDT17P0C025 328 aa12.83□□□□□ -0.36
VPS52-220ENST00000493674 TSHRP16473 764 aa12.83□□□□□ -0.36
VPS52-220ENST00000493674 OPRD1P41143 372 aa12.83□□□□□ -0.36
VPS52-220ENST00000493674 EIF2DP41214 584 aaKnown RBP12.83□□□□□ -0.36
VPS52-220ENST00000493674 TNNT3P45378 269 aaPredicted RBP12.83□□□□□ -0.36
VPS52-220ENST00000493674 CSNK1DP48730 415 aa12.83□□□□□ -0.36
VPS52-220ENST00000493674 NUMBP49757 651 aa12.83□□□□□ -0.36
VPS52-220ENST00000493674 SARNPP82979 210 aaKnown RBP12.83□□□□□ -0.36
VPS52-220ENST00000493674 TFF2Q03403 129 aa12.83□□□□□ -0.36
VPS52-220ENST00000493674 SULT2A1Q06520 285 aa12.83□□□□□ -0.36
VPS52-220ENST00000493674 PDIA2Q13087 525 aaKnown RBP12.83□□□□□ -0.36
VPS52-220ENST00000493674 RUNX3Q13761 415 aa12.83□□□□□ -0.36
VPS52-220ENST00000493674 GEN1Q17RS7 908 aa12.83□□□□□ -0.36
VPS52-220ENST00000493674 ARMC3Q5W041 872 aa12.83□□□□□ -0.36
VPS52-220ENST00000493674 NAPEPLDQ6IQ20 393 aa12.83□□□□□ -0.36
VPS52-220ENST00000493674 DENND5AQ6IQ26 1287 aa12.83□□□□□ -0.36
VPS52-220ENST00000493674 LINGO4Q6UY18 593 aa12.83□□□□□ -0.36
VPS52-220ENST00000493674 RANBP10Q6VN20 620 aa12.83□□□□□ -0.36
VPS52-220ENST00000493674 LINC00523Q86TU6 105 aa12.83□□□□□ -0.36
VPS52-220ENST00000493674 CCDC25Q86WR0 208 aa12.83□□□□□ -0.36
VPS52-220ENST00000493674 SH2D3CQ8N5H7 860 aa12.83□□□□□ -0.36
VPS52-220ENST00000493674 ISG20Q96AZ6 181 aaKnown RBP12.83□□□□□ -0.36
VPS52-220ENST00000493674 MRGPRX3Q96LB0 322 aa12.83□□□□□ -0.36
VPS52-220ENST00000493674 XPO6Q96QU8 1125 aaKnown RBP12.83□□□□□ -0.36
VPS52-220ENST00000493674 NUDCD1Q96RS6 583 aa12.83□□□□□ -0.36
VPS52-220ENST00000493674 SEMA3CQ99985 751 aa12.83□□□□□ -0.36
VPS52-220ENST00000493674 RPP25Q9BUL9 199 aaKnown RBP12.83□□□□□ -0.36
VPS52-220ENST00000493674 ARNT2Q9HBZ2 717 aa12.83□□□□□ -0.36
VPS52-220ENST00000493674 SAYSD1Q9NPB0 183 aa12.83□□□□□ -0.36
VPS52-220ENST00000493674 DNAJC17Q9NVM6 304 aaKnown RBP12.83□□□□□ -0.36
VPS52-220ENST00000493674 NFS1Q9Y697 457 aa12.83□□□□□ -0.36
VPS52-220ENST00000493674 NUMBLQ9Y6R0 609 aa12.83□□□□□ -0.36
VPS52-220ENST00000493674 LOC285095A0A1B0GVY8 99 aa12.82□□□□□ -0.36
VPS52-220ENST00000493674 TRIM24O15164 1050 aa12.82□□□□□ -0.36
VPS52-220ENST00000493674 AVILO75366 819 aa12.82□□□□□ -0.36
VPS52-220ENST00000493674 GJB3O75712 270 aa12.82□□□□□ -0.36
VPS52-220ENST00000493674 NEBLO76041 1014 aa12.82□□□□□ -0.36
VPS52-220ENST00000493674 SRCP12931 536 aa12.82□□□□□ -0.36
VPS52-220ENST00000493674 GJA4P35212 333 aa12.82□□□□□ -0.36
VPS52-220ENST00000493674 CD86P42081 329 aa12.82□□□□□ -0.36
VPS52-220ENST00000493674 CTSOP43234 321 aaPredicted RBP12.82□□□□□ -0.36
VPS52-220ENST00000493674 DGKGP49619 791 aa12.82□□□□□ -0.36
VPS52-220ENST00000493674 WNT3AP56704 352 aa12.82□□□□□ -0.36
VPS52-220ENST00000493674 OLIG2Q13516 323 aa12.82□□□□□ -0.36
VPS52-220ENST00000493674 GRM2Q14416 872 aa12.82□□□□□ -0.36
VPS52-220ENST00000493674 SPARCL1Q14515 664 aa12.82□□□□□ -0.36
VPS52-220ENST00000493674 CCDC38Q502W7 563 aa12.82□□□□□ -0.36
VPS52-220ENST00000493674 DNAJC21Q5F1R6 531 aaKnown RBP12.82□□□□□ -0.36
VPS52-220ENST00000493674 MBLAC2Q68D91 279 aa12.82□□□□□ -0.36
VPS52-220ENST00000493674 PTCRAQ6ISU1 281 aaPredicted RBP12.82□□□□□ -0.36
VPS52-220ENST00000493674 IGDCC3Q8IVU1 814 aa12.82□□□□□ -0.36
VPS52-220ENST00000493674 YAF2Q8IY57 180 aa12.82□□□□□ -0.36
VPS52-220ENST00000493674 ZBED8Q8IZ13 594 aa12.82□□□□□ -0.36
VPS52-220ENST00000493674 ST13P5Q8NFI4 369 aaPredicted RBP12.82□□□□□ -0.36
VPS52-220ENST00000493674 MYO19Q96H55 970 aa12.82□□□□□ -0.36
VPS52-220ENST00000493674 FEM1CQ96JP0 617 aa12.82□□□□□ -0.36
VPS52-220ENST00000493674 TTC25Q96NG3 672 aa12.82□□□□□ -0.36
VPS52-220ENST00000493674 TRIB3Q96RU7 358 aa12.82□□□□□ -0.36
VPS52-220ENST00000493674 TBL1YQ9BQ87 522 aa12.82□□□□□ -0.36
VPS52-220ENST00000493674 TRMT61BQ9BVS5 477 aaKnown RBP12.82□□□□□ -0.36
VPS52-220ENST00000493674 CEP44Q9C0F1 390 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms