RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 FAIM2Q9BWQ8 316 aa15.55■□□□□ 0.08
PTPRF-206ENST00000429895 PCDHA11Q9Y5I1 949 aa15.55■□□□□ 0.08
PTPRF-206ENST00000429895 APOC4-APOC2K7ER74 178 aa15.55■□□□□ 0.08
PTPRF-206ENST00000429895 TLL1O43897 1013 aa15.55■□□□□ 0.08
PTPRF-206ENST00000429895 CBX6O95503 412 aa15.55■□□□□ 0.08
PTPRF-206ENST00000429895 APOC2P02655 101 aa15.55■□□□□ 0.08
PTPRF-206ENST00000429895 CD52P31358 61 aa15.55■□□□□ 0.08
PTPRF-206ENST00000429895 NRF1Q16656 503 aa15.55■□□□□ 0.08
PTPRF-206ENST00000429895 VCPIP1Q96JH7 1222 aa15.55■□□□□ 0.08
PTPRF-206ENST00000429895 SLC9A7Q96T83 725 aa15.55■□□□□ 0.08
PTPRF-206ENST00000429895 ATAD3AQ9NVI7 634 aa15.55■□□□□ 0.08
PTPRF-206ENST00000429895 DDX18Q9NVP1 670 aaKnown RBP15.55■□□□□ 0.08
PTPRF-206ENST00000429895 COPG2Q9UBF2 871 aa15.55■□□□□ 0.08
PTPRF-206ENST00000429895 TNPO3Q9Y5L0 923 aaKnown RBP15.55■□□□□ 0.08
PTPRF-206ENST00000429895 NRCAMQ92823 1304 aa15.55■□□□□ 0.08
PTPRF-206ENST00000429895 PROCP04070 461 aa15.55■□□□□ 0.08
PTPRF-206ENST00000429895 EIF4BP23588 611 aaKnown RBP15.55■□□□□ 0.08
PTPRF-206ENST00000429895 CACNA2D1P54289 1103 aa15.55■□□□□ 0.08
PTPRF-206ENST00000429895 HOMEZQ8IX15 550 aa15.55■□□□□ 0.08
PTPRF-206ENST00000429895 NARS2Q96I59 477 aaKnown RBP15.55■□□□□ 0.08
PTPRF-206ENST00000429895 VAT1Q99536 393 aa15.55■□□□□ 0.08
PTPRF-206ENST00000429895 UNC13BO14795 1591 aa15.55■□□□□ 0.08
PTPRF-206ENST00000429895 CLDN5O00501 218 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 CD3EAPO15446 510 aaKnown RBP15.54■□□□□ 0.08
PTPRF-206ENST00000429895 SCN2BO60939 215 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 CDKAL1Q5VV42 579 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 PLPP4Q5VZY2 271 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 SALL1Q9NSC2 1324 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 E7ENQ6 273 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 ERAL1O75616 437 aaKnown RBP15.54■□□□□ 0.08
PTPRF-206ENST00000429895 NR2F1P10589 423 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 CXCR2P25025 360 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 RRP1BQ14684 758 aaKnown RBP15.54■□□□□ 0.08
PTPRF-206ENST00000429895 GCNT7Q6ZNI0 430 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 NIPA1Q7RTP0 329 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 NETO2Q8NC67 525 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 STAG3L4Q8TBR4 150 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 ZYG11BQ9C0D3 744 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 PAIP1Q9H074 479 aaKnown RBP15.54■□□□□ 0.08
PTPRF-206ENST00000429895 PORCNQ9H237 461 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 ACP6Q9NPH0 428 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 NDUFA13Q9P0J0 144 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 CCNB1P14635 433 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 RGS1Q08116 209 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 ZNF697Q5TEC3 545 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 PMF1Q6P1K2 205 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 TMC3Q7Z5M5 1100 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 PEG10Q86TG7 708 aaKnown RBP15.54■□□□□ 0.08
PTPRF-206ENST00000429895 DHRSXQ8N5I4 330 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 ABCG4Q9H172 646 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 BANF1O75531 89 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 ADRA1DP25100 572 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 MRPS22P82650 360 aaKnown RBP15.54■□□□□ 0.08
PTPRF-206ENST00000429895 ASB2Q96Q27 587 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 SLC25A23Q9BV35 468 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 CDH9Q9ULB4 789 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 HTR1BP28222 390 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 TNFSF9P41273 254 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 ITGA1P56199 1179 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 RBBP4Q09028 425 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 RAPSNQ13702 412 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 TARBP2Q15633 366 aaKnown RBP15.54■□□□□ 0.08
PTPRF-206ENST00000429895 OR6K2Q8NGY2 324 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 C9orf16Q9BUW7 83 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 IL22Q9GZX6 179 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 BRD9Q9H8M2 597 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 CPS1P31327 1500 aa15.54■□□□□ 0.08
PTPRF-206ENST00000429895 AP3D1O14617 1153 aa15.53■□□□□ 0.08
PTPRF-206ENST00000429895 CABYRO75952 493 aa15.53■□□□□ 0.08
PTPRF-206ENST00000429895 FARP2O94887 1054 aaPredicted RBP15.53■□□□□ 0.08
PTPRF-206ENST00000429895 RPL38P63173 70 aaKnown RBP15.53■□□□□ 0.08
PTPRF-206ENST00000429895 AFTPHQ6ULP2 937 aa15.53■□□□□ 0.08
PTPRF-206ENST00000429895 EXOC3L1Q86VI1 746 aa15.53■□□□□ 0.08
PTPRF-206ENST00000429895 KAT5Q92993 513 aa15.53■□□□□ 0.08
PTPRF-206ENST00000429895 CAVIN3Q969G5 261 aa15.53■□□□□ 0.08
PTPRF-206ENST00000429895 REXO5Q96IC2 774 aaKnown RBP15.53■□□□□ 0.08
PTPRF-206ENST00000429895 MRPS7Q9Y2R9 242 aaKnown RBP15.53■□□□□ 0.08
PTPRF-206ENST00000429895 PRKAB1Q9Y478 270 aa15.53■□□□□ 0.08
PTPRF-206ENST00000429895 TCRBV5S4A2TA0A5A2 114 aa15.53■□□□□ 0.08
PTPRF-206ENST00000429895 OPLAHO14841 1288 aa15.53■□□□□ 0.08
PTPRF-206ENST00000429895 ZMPSTE24O75844 475 aa15.53■□□□□ 0.08
PTPRF-206ENST00000429895 LRATO95237 230 aa15.53■□□□□ 0.08
PTPRF-206ENST00000429895 TKTP29401 623 aaKnown RBP15.53■□□□□ 0.08
PTPRF-206ENST00000429895 USP41Q3LFD5 358 aa15.53■□□□□ 0.08
PTPRF-206ENST00000429895 SAMD4BQ5PRF9 694 aaKnown RBP15.53■□□□□ 0.08
PTPRF-206ENST00000429895 RASAL3Q86YV0 1011 aa15.53■□□□□ 0.08
PTPRF-206ENST00000429895 ZNF557Q8N988 423 aaPredicted RBP15.53■□□□□ 0.08
PTPRF-206ENST00000429895 PSMD11O00231 422 aa15.53■□□□□ 0.08
PTPRF-206ENST00000429895 ASNA1O43681 348 aa15.53■□□□□ 0.08
PTPRF-206ENST00000429895 UNC5AQ6ZN44 842 aa15.53■□□□□ 0.08
PTPRF-206ENST00000429895 APTXQ7Z2E3 356 aaKnown RBP15.53■□□□□ 0.08
PTPRF-206ENST00000429895 UBE2E3Q969T4 207 aa15.53■□□□□ 0.08
PTPRF-206ENST00000429895 ZNF354BQ96LW1 612 aa15.53■□□□□ 0.08
PTPRF-206ENST00000429895 SEMA3CQ99985 751 aa15.53■□□□□ 0.08
PTPRF-206ENST00000429895 TAS2R14Q9NYV8 317 aa15.53■□□□□ 0.08
PTPRF-206ENST00000429895 CYP4F2P78329 520 aa15.53■□□□□ 0.08
PTPRF-206ENST00000429895 SP3Q02447 781 aa15.53■□□□□ 0.08
PTPRF-206ENST00000429895 CYP4F3Q08477 520 aa15.53■□□□□ 0.08
PTPRF-206ENST00000429895 ZFP28Q8NHY6 868 aa15.53■□□□□ 0.08
PTPRF-206ENST00000429895 MAGEE2Q8TD90 523 aaPredicted RBP15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms