RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 MTFR1LQ9H019 292 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 CYP26B1Q9NR63 512 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 CHST12Q9NRB3 414 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 SETD4Q9NVD3 440 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 ADAMTS1Q9UHI8 967 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 MADDQ8WXG6 1647 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 LOC390937A0A1W2PQ73 354 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 INPPL1O15357 1258 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 DDX3YO15523 660 aaKnown RBP4.2□□□□□ -1.74
NEDD4-201ENST00000338963 BCAS2O75934 225 aaPredicted RBP4.2□□□□□ -1.74
NEDD4-201ENST00000338963 SLC22A5O76082 557 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 ATE1O95260 518 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 CLUP10909 449 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 ITGA4P13612 1032 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 TIE1P35590 1138 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 ETV5P41161 510 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 FNTBP49356 437 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 CCT3P49368 545 aaKnown RBP4.2□□□□□ -1.74
NEDD4-201ENST00000338963 ALDH7A1P49419 539 aaKnown RBP4.2□□□□□ -1.74
NEDD4-201ENST00000338963 ORC1Q13415 861 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 RFTN1Q14699 578 aaPredicted RBP4.2□□□□□ -1.74
NEDD4-201ENST00000338963 TOMM20Q15388 145 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 BRAT1Q6PJG6 821 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 KCTD8Q6ZWB6 473 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 GPR142Q7Z601 462 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 GPALPP1Q8IXQ4 340 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 DEFB107AQ8IZN7 70 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 CADM2Q8N3J6 435 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 HEXDCQ8WVB3 486 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 RAB7BQ96AH8 199 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 BTN2A3PQ96KV6 586 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 HYLS1Q96M11 299 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 ABCG8Q9H221 673 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 NANOGQ9H9S0 305 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 CHORDC1Q9UHD1 332 aaPredicted RBP4.2□□□□□ -1.74
NEDD4-201ENST00000338963 SERPINA10Q9UK55 444 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 ZFR2Q9UPR6 939 aaKnown RBP4.2□□□□□ -1.74
NEDD4-201ENST00000338963 MGAT4BQ9UQ53 548 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 NID2Q14112 1375 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 TRPM2O94759 1503 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 AGLP35573 1532 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 XDHP47989 1333 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 RNF103-CHMP3A0A140T963 221 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 ZNF780AO75290 641 aaPredicted RBP4.2□□□□□ -1.74
NEDD4-201ENST00000338963 SLITRK3O94933 977 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 VAPBO95292 243 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 CAPGP40121 348 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 ITGA8P53708 1063 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 PRKCDQ05655 676 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 MERTKQ12866 999 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 TRAF3Q13114 568 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 NR5A1Q13285 461 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 PLD1Q13393 1074 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 HIST2H2ACQ16777 129 aaPredicted RBP4.2□□□□□ -1.74
NEDD4-201ENST00000338963 EFHC2Q5JST6 749 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 MIIPQ5JXC2 388 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 SCML4Q8N228 414 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 EMC1Q8N766 993 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 PSD4Q8NDX1 1056 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 NXNL1Q96CM4 212 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 RADILQ96JH8 1075 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 LDHAL6BQ9BYZ2 381 aaPredicted RBP4.2□□□□□ -1.74
NEDD4-201ENST00000338963 ING2Q9H160 280 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 XKR8Q9H6D3 395 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 COPS7BQ9H9Q2 264 aaPredicted RBP4.2□□□□□ -1.74
NEDD4-201ENST00000338963 SEC31BQ9NQW1 1179 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 STARD7Q9NQZ5 370 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 MTMR4Q9NYA4 1195 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 FKBP7Q9Y680 259 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 TOPBP1Q92547 1522 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 FAM86C2PA6NEL3 165 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 TRIM77I1YAP6 450 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 MED24O75448 989 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 CPA2P48052 419 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 AQP5P55064 265 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 TBX4P57082 545 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 MRPS22P82650 360 aaKnown RBP4.2□□□□□ -1.74
NEDD4-201ENST00000338963 GNA12Q03113 381 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 IL18R1Q13478 541 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 TCEAL6Q6IPX3 200 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 C16orf46Q6P387 395 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 NAPRTQ6XQN6 538 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 GLRX5Q86SX6 157 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 LINC00523Q86TU6 105 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 DGKHQ86XP1 1220 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 IRF2BP1Q8IU81 584 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 ARFGAP1Q8N6T3 406 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 PSMA8Q8TAA3 256 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 ASZ1Q8WWH4 475 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 RNF34Q969K3 372 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 PHOX2BQ99453 314 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 SAYSD1Q9NPB0 183 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 SIRT5Q9NXA8 310 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 CNOT6Q9ULM6 557 aaKnown RBP4.2□□□□□ -1.74
NEDD4-201ENST00000338963 ABCG2Q9UNQ0 655 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 INVSQ9Y283 1065 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 PCDHGB2Q9Y5G2 931 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 CDY1Q9Y6F8 540 aa4.2□□□□□ -1.74
NEDD4-201ENST00000338963 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP4.2□□□□□ -1.74
NEDD4-201ENST00000338963 A0A1B0GWJ7 208 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms