RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.78■□□□□ 0.28
CLN3-255ENST00000637100 IL36AQ9UHA7 158 aa16.78■□□□□ 0.28
CLN3-255ENST00000637100 FADS3Q9Y5Q0 445 aa16.78■□□□□ 0.28
CLN3-255ENST00000637100 TENM4Q6N022 2769 aa16.77■□□□□ 0.28
CLN3-255ENST00000637100 DOCK4Q8N1I0 1966 aa16.77■□□□□ 0.28
CLN3-255ENST00000637100 POM121BA6NF01 834 aa16.77■□□□□ 0.28
CLN3-255ENST00000637100 CAPN8A6NHC0 703 aa16.77■□□□□ 0.28
CLN3-255ENST00000637100 BIN1O00499 593 aa16.77■□□□□ 0.28
CLN3-255ENST00000637100 LEFTY1O75610 366 aa16.77■□□□□ 0.28
CLN3-255ENST00000637100 PLA2G2AP14555 144 aa16.77■□□□□ 0.28
CLN3-255ENST00000637100 L1CAMP32004 1257 aa16.77■□□□□ 0.28
CLN3-255ENST00000637100 NEK3P51956 506 aa16.77■□□□□ 0.28
CLN3-255ENST00000637100 UCNP55089 124 aa16.77■□□□□ 0.28
CLN3-255ENST00000637100 PCBP4P57723 403 aaKnown RBP16.77■□□□□ 0.28
CLN3-255ENST00000637100 CLDN2P57739 230 aa16.77■□□□□ 0.28
CLN3-255ENST00000637100 RPS21P63220 83 aaKnown RBP16.77■□□□□ 0.28
CLN3-255ENST00000637100 CCDC173Q0VFZ6 552 aa16.77■□□□□ 0.28
CLN3-255ENST00000637100 SLC47A2Q86VL8 602 aa16.77■□□□□ 0.28
CLN3-255ENST00000637100 PCDH20Q8N6Y1 951 aaKnown RBP16.77■□□□□ 0.28
CLN3-255ENST00000637100 PPP1R16AQ96I34 528 aa16.77■□□□□ 0.28
CLN3-255ENST00000637100 FEM1CQ96JP0 617 aa16.77■□□□□ 0.28
CLN3-255ENST00000637100 CALN1Q9BXU9 219 aa16.77■□□□□ 0.28
CLN3-255ENST00000637100 RETREG1Q9H6L5 497 aa16.77■□□□□ 0.28
CLN3-255ENST00000637100 FZD3Q9NPG1 666 aa16.77■□□□□ 0.28
CLN3-255ENST00000637100 SALL4Q9UJQ4 1053 aa16.77■□□□□ 0.28
CLN3-255ENST00000637100 STAP1Q9ULZ2 295 aa16.77■□□□□ 0.28
CLN3-255ENST00000637100 PAXBP1Q9Y5B6 917 aa16.77■□□□□ 0.28
CLN3-255ENST00000637100 A0A1W2PNU3 283 aaPredicted RBP16.76■□□□□ 0.27
CLN3-255ENST00000637100 TPP1O14773 563 aa16.76■□□□□ 0.27
CLN3-255ENST00000637100 BNIP3LO60238 219 aa16.76■□□□□ 0.27
CLN3-255ENST00000637100 ADRB3P13945 408 aa16.76■□□□□ 0.27
CLN3-255ENST00000637100 KRT9P35527 623 aa16.76■□□□□ 0.27
CLN3-255ENST00000637100 USP8P40818 1118 aa16.76■□□□□ 0.27
CLN3-255ENST00000637100 SERPINH1P50454 418 aaKnown RBP16.76■□□□□ 0.27
CLN3-255ENST00000637100 HS1BP3Q53T59 392 aa16.76■□□□□ 0.27
CLN3-255ENST00000637100 RETSATQ6NUM9 610 aa16.76■□□□□ 0.27
CLN3-255ENST00000637100 ZCCHC8Q6NZY4 707 aaKnown RBP16.76■□□□□ 0.27
CLN3-255ENST00000637100 LRRC31Q6UY01 552 aa16.76■□□□□ 0.27
CLN3-255ENST00000637100 LINGO4Q6UY18 593 aa16.76■□□□□ 0.27
CLN3-255ENST00000637100 TMC6Q7Z403 805 aa16.76■□□□□ 0.27
CLN3-255ENST00000637100 TBATAQ96M53 351 aa16.76■□□□□ 0.27
CLN3-255ENST00000637100 TBCBQ99426 244 aa16.76■□□□□ 0.27
CLN3-255ENST00000637100 MYOCQ99972 504 aa16.76■□□□□ 0.27
CLN3-255ENST00000637100 HEPHQ9BQS7 1158 aa16.76■□□□□ 0.27
CLN3-255ENST00000637100 DPH1Q9BZG8 443 aa16.76■□□□□ 0.27
CLN3-255ENST00000637100 DYRK4Q9NR20 520 aa16.76■□□□□ 0.27
CLN3-255ENST00000637100 MPP6Q9NZW5 540 aa16.76■□□□□ 0.27
CLN3-255ENST00000637100 PPARGC1AQ9UBK2 798 aaKnown RBP16.76■□□□□ 0.27
CLN3-255ENST00000637100 TMEM59LQ9UK28 342 aa16.76■□□□□ 0.27
CLN3-255ENST00000637100 SNX10Q9Y5X0 201 aa16.76■□□□□ 0.27
CLN3-255ENST00000637100 TRPM6Q9BX84 2022 aa16.75■□□□□ 0.27
CLN3-255ENST00000637100 EME2A4GXA9 379 aaPredicted RBP16.75■□□□□ 0.27
CLN3-255ENST00000637100 RAD51BO15315 384 aa16.75■□□□□ 0.27
CLN3-255ENST00000637100 FFAR2O15552 330 aa16.75■□□□□ 0.27
CLN3-255ENST00000637100 USP12O75317 370 aa16.75■□□□□ 0.27
CLN3-255ENST00000637100 CSO75390 466 aaKnown RBP16.75■□□□□ 0.27
CLN3-255ENST00000637100 PCDH8O95206 1070 aa16.75■□□□□ 0.27
CLN3-255ENST00000637100 PAK4O96013 591 aaPredicted RBP16.75■□□□□ 0.27
CLN3-255ENST00000637100 MPOP05164 745 aa16.75■□□□□ 0.27
CLN3-255ENST00000637100 RABIFP47224 123 aa16.75■□□□□ 0.27
CLN3-255ENST00000637100 BPIFB4P59827 614 aa16.75■□□□□ 0.27
CLN3-255ENST00000637100 PFN3P60673 137 aa16.75■□□□□ 0.27
CLN3-255ENST00000637100 ARF5P84085 180 aa16.75■□□□□ 0.27
CLN3-255ENST00000637100 RHDQ02161 417 aa16.75■□□□□ 0.27
CLN3-255ENST00000637100 NRG1Q02297 640 aaPredicted RBP16.75■□□□□ 0.27
CLN3-255ENST00000637100 DEUP1Q05D60 604 aa16.75■□□□□ 0.27
CLN3-255ENST00000637100 ISXQ2M1V0 245 aa16.75■□□□□ 0.27
CLN3-255ENST00000637100 CARD16Q5EG05 197 aa16.75■□□□□ 0.27
CLN3-255ENST00000637100 MANEALQ5VSG8 457 aa16.75■□□□□ 0.27
CLN3-255ENST00000637100 TRNP1Q6NT89 227 aa16.75■□□□□ 0.27
CLN3-255ENST00000637100 XYLT1Q86Y38 959 aa16.75■□□□□ 0.27
CLN3-255ENST00000637100 DENND6BQ8NEG7 585 aa16.75■□□□□ 0.27
CLN3-255ENST00000637100 ZNF548Q8NEK5 533 aaPredicted RBP16.75■□□□□ 0.27
CLN3-255ENST00000637100 OR7D4Q8NG98 312 aa16.75■□□□□ 0.27
CLN3-255ENST00000637100 RAB7BQ96AH8 199 aa16.75■□□□□ 0.27
CLN3-255ENST00000637100 C18orf8Q96DM3 657 aa16.75■□□□□ 0.27
CLN3-255ENST00000637100 PRR11Q96HE9 360 aaPredicted RBP16.75■□□□□ 0.27
CLN3-255ENST00000637100 LGMNQ99538 433 aa16.75■□□□□ 0.27
CLN3-255ENST00000637100 TNKS2Q9H2K2 1166 aa16.75■□□□□ 0.27
CLN3-255ENST00000637100 TMPRSS4Q9NRS4 437 aa16.75■□□□□ 0.27
CLN3-255ENST00000637100 NCKIPSDQ9NZQ3 722 aa16.75■□□□□ 0.27
CLN3-255ENST00000637100 KIAA1468Q9P260 1216 aa16.75■□□□□ 0.27
CLN3-255ENST00000637100 KLF15Q9UIH9 416 aa16.75■□□□□ 0.27
CLN3-255ENST00000637100 DNAJC12Q9UKB3 198 aa16.75■□□□□ 0.27
CLN3-255ENST00000637100 TSPAN6O43657 245 aa16.74■□□□□ 0.27
CLN3-255ENST00000637100 GADD45BO75293 160 aaPredicted RBP16.74■□□□□ 0.27
CLN3-255ENST00000637100 PRKCSHP14314 528 aaPredicted RBP16.74■□□□□ 0.27
CLN3-255ENST00000637100 OR1E1P30953 314 aa16.74■□□□□ 0.27
CLN3-255ENST00000637100 FLT3P36888 993 aa16.74■□□□□ 0.27
CLN3-255ENST00000637100 SULT1E1P49888 294 aa16.74■□□□□ 0.27
CLN3-255ENST00000637100 CXADRP78310 365 aa16.74■□□□□ 0.27
CLN3-255ENST00000637100 GABREP78334 506 aa16.74■□□□□ 0.27
CLN3-255ENST00000637100 CFHR1Q03591 330 aa16.74■□□□□ 0.27
CLN3-255ENST00000637100 TPRG1LQ5T0D9 272 aa16.74■□□□□ 0.27
CLN3-255ENST00000637100 PARS2Q7L3T8 475 aaKnown RBP16.74■□□□□ 0.27
CLN3-255ENST00000637100 PARGQ86W56 976 aa16.74■□□□□ 0.27
CLN3-255ENST00000637100 TMEM35BQ8NCS4 154 aa16.74■□□□□ 0.27
CLN3-255ENST00000637100 TPCN2Q8NHX9 752 aa16.74■□□□□ 0.27
CLN3-255ENST00000637100 EVA1BQ9NVM1 165 aa16.74■□□□□ 0.27
CLN3-255ENST00000637100 DNAJC28Q9NX36 388 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms