RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 ZNF212Q9UDV6 495 aa13.71□□□□□ -0.21
CLK3-218ENST00000566926 FAM72CH0Y354 149 aa13.7□□□□□ -0.22
CLK3-218ENST00000566926 CBX4O00257 560 aa13.7□□□□□ -0.22
CLK3-218ENST00000566926 MCF2LO15068 1137 aa13.7□□□□□ -0.22
CLK3-218ENST00000566926 MID1O15344 667 aa13.7□□□□□ -0.22
CLK3-218ENST00000566926 CREB3O43889 395 aa13.7□□□□□ -0.22
CLK3-218ENST00000566926 PRPSAP2O60256 369 aa13.7□□□□□ -0.22
CLK3-218ENST00000566926 SNAP91O60641 907 aa13.7□□□□□ -0.22
CLK3-218ENST00000566926 RAMP2O60895 175 aa13.7□□□□□ -0.22
CLK3-218ENST00000566926 SEMA4FO95754 770 aa13.7□□□□□ -0.22
CLK3-218ENST00000566926 IL1BP01584 269 aa13.7□□□□□ -0.22
CLK3-218ENST00000566926 SRCP12931 536 aa13.7□□□□□ -0.22
CLK3-218ENST00000566926 SLC8A1P32418 973 aa13.7□□□□□ -0.22
CLK3-218ENST00000566926 RECQLP46063 649 aaPredicted RBP13.7□□□□□ -0.22
CLK3-218ENST00000566926 NUMBP49757 651 aa13.7□□□□□ -0.22
CLK3-218ENST00000566926 CCDC15Q0P6D6 951 aa13.7□□□□□ -0.22
CLK3-218ENST00000566926 POLD3Q15054 466 aaPredicted RBP13.7□□□□□ -0.22
CLK3-218ENST00000566926 TRIM61Q5EBN2 209 aa13.7□□□□□ -0.22
CLK3-218ENST00000566926 ARTNQ5T4W7 220 aa13.7□□□□□ -0.22
CLK3-218ENST00000566926 FAM72AQ5TYM5 149 aa13.7□□□□□ -0.22
CLK3-218ENST00000566926 FAM72DQ6L9T8 149 aa13.7□□□□□ -0.22
CLK3-218ENST00000566926 SLC23A3Q6PIS1 610 aa13.7□□□□□ -0.22
CLK3-218ENST00000566926 ZNF572Q7Z3I7 529 aaPredicted RBP13.7□□□□□ -0.22
CLK3-218ENST00000566926 NLRP14Q86W24 1093 aa13.7□□□□□ -0.22
CLK3-218ENST00000566926 FAM72BQ86X60 149 aa13.7□□□□□ -0.22
CLK3-218ENST00000566926 OR7D4Q8NG98 312 aa13.7□□□□□ -0.22
CLK3-218ENST00000566926 ACTRT1Q8TDG2 376 aa13.7□□□□□ -0.22
CLK3-218ENST00000566926 DNASE2BQ8WZ79 361 aa13.7□□□□□ -0.22
CLK3-218ENST00000566926 RMDN1Q96DB5 314 aa13.7□□□□□ -0.22
CLK3-218ENST00000566926 BTBD6Q96KE9 485 aa13.7□□□□□ -0.22
CLK3-218ENST00000566926 CEP44Q9C0F1 390 aa13.7□□□□□ -0.22
CLK3-218ENST00000566926 GOLPH3Q9H4A6 298 aa13.7□□□□□ -0.22
CLK3-218ENST00000566926 DDX56Q9NY93 547 aaKnown RBP13.7□□□□□ -0.22
CLK3-218ENST00000566926 FZD4Q9ULV1 537 aa13.7□□□□□ -0.22
CLK3-218ENST00000566926 TPX2Q9ULW0 747 aaKnown RBP13.7□□□□□ -0.22
CLK3-218ENST00000566926 SLC6A14Q9UN76 642 aa13.7□□□□□ -0.22
CLK3-218ENST00000566926 AP4E1Q9UPM8 1137 aa13.7□□□□□ -0.22
CLK3-218ENST00000566926 ASCC3Q8N3C0 2202 aaKnown RBP13.7□□□□□ -0.22
CLK3-218ENST00000566926 KNL1Q8NG31 2342 aa13.69□□□□□ -0.22
CLK3-218ENST00000566926 CTAGE15A4D2H0 777 aa13.69□□□□□ -0.22
CLK3-218ENST00000566926 ZSCAN5CA6NGD5 496 aaPredicted RBP13.69□□□□□ -0.22
CLK3-218ENST00000566926 LRRC72A6NJI9 287 aa13.69□□□□□ -0.22
CLK3-218ENST00000566926 WASH4PA8MWX3 477 aa13.69□□□□□ -0.22
CLK3-218ENST00000566926 SLC30A4O14863 429 aa13.69□□□□□ -0.22
CLK3-218ENST00000566926 DDX3YO15523 660 aaKnown RBP13.69□□□□□ -0.22
CLK3-218ENST00000566926 RNASEH2AO75792 299 aaKnown RBP13.69□□□□□ -0.22
CLK3-218ENST00000566926 SERPINF2P08697 491 aa13.69□□□□□ -0.22
CLK3-218ENST00000566926 CTAGE8P0CG41 777 aa13.69□□□□□ -0.22
CLK3-218ENST00000566926 ACSL1P33121 698 aa13.69□□□□□ -0.22
CLK3-218ENST00000566926 PSMD8P48556 350 aa13.69□□□□□ -0.22
CLK3-218ENST00000566926 PEX5P50542 639 aa13.69□□□□□ -0.22
CLK3-218ENST00000566926 YBEYP58557 167 aaPredicted RBP13.69□□□□□ -0.22
CLK3-218ENST00000566926 TPI1P60174 286 aa13.69□□□□□ -0.22
CLK3-218ENST00000566926 PPP2R5EQ16537 467 aa13.69□□□□□ -0.22
CLK3-218ENST00000566926 ODF2Q5BJF6 829 aa13.69□□□□□ -0.22
CLK3-218ENST00000566926 SEL1L2Q5TEA6 688 aa13.69□□□□□ -0.22
CLK3-218ENST00000566926 DCAF12L1Q5VU92 463 aa13.69□□□□□ -0.22
CLK3-218ENST00000566926 CTAGE6Q86UF2 777 aa13.69□□□□□ -0.22
CLK3-218ENST00000566926 CREG2Q8IUH2 290 aa13.69□□□□□ -0.22
CLK3-218ENST00000566926 CTAGE4Q8IX94 777 aa13.69□□□□□ -0.22
CLK3-218ENST00000566926 KATNAL2Q8IYT4 538 aa13.69□□□□□ -0.22
CLK3-218ENST00000566926 PYROXD2Q8N2H3 581 aa13.69□□□□□ -0.22
CLK3-218ENST00000566926 RASGEF1CQ8N431 466 aa13.69□□□□□ -0.22
CLK3-218ENST00000566926 HDDC3Q8N4P3 179 aa13.69□□□□□ -0.22
CLK3-218ENST00000566926 RTL3Q8N8U3 475 aaKnown RBP13.69□□□□□ -0.22
CLK3-218ENST00000566926 ARHGEF2Q92974 986 aaKnown RBP13.69□□□□□ -0.22
CLK3-218ENST00000566926 RBM41Q96IZ5 413 aaKnown RBP13.69□□□□□ -0.22
CLK3-218ENST00000566926 EDEM2Q9BV94 578 aa13.69□□□□□ -0.22
CLK3-218ENST00000566926 ACE2Q9BYF1 805 aaPredicted RBP13.69□□□□□ -0.22
CLK3-218ENST00000566926 TRIM7Q9C029 511 aa13.69□□□□□ -0.22
CLK3-218ENST00000566926 SMOC1Q9H4F8 434 aa13.69□□□□□ -0.22
CLK3-218ENST00000566926 DHX35Q9H5Z1 703 aaKnown RBP13.69□□□□□ -0.22
CLK3-218ENST00000566926 TMEM74BQ9NUR3 256 aa13.69□□□□□ -0.22
CLK3-218ENST00000566926 PCSK1NQ9UHG2 260 aa13.69□□□□□ -0.22
CLK3-218ENST00000566926 CNOT1A5YKK6 2376 aaKnown RBP13.69□□□□□ -0.22
CLK3-218ENST00000566926 DMXL1Q9Y485 3027 aa13.68□□□□□ -0.22
CLK3-218ENST00000566926 A0A1B0GTW7 788 aa13.68□□□□□ -0.22
CLK3-218ENST00000566926 A0A1W2PP55 124 aa13.68□□□□□ -0.22
CLK3-218ENST00000566926 EFCAB8A8MWE9 144 aa13.68□□□□□ -0.22
CLK3-218ENST00000566926 PGRMC1O00264 195 aaKnown RBP13.68□□□□□ -0.22
CLK3-218ENST00000566926 RIOK3O14730 519 aaKnown RBP13.68□□□□□ -0.22
CLK3-218ENST00000566926 SLC7A4O43246 635 aa13.68□□□□□ -0.22
CLK3-218ENST00000566926 DAPK3O43293 454 aa13.68□□□□□ -0.22
CLK3-218ENST00000566926 BNIP3LO60238 219 aa13.68□□□□□ -0.22
CLK3-218ENST00000566926 GDF9O60383 454 aa13.68□□□□□ -0.22
CLK3-218ENST00000566926 ZMPSTE24O75844 475 aa13.68□□□□□ -0.22
CLK3-218ENST00000566926 MT-CO1P00395 513 aa13.68□□□□□ -0.22
CLK3-218ENST00000566926 PRNPP04156 253 aa13.68□□□□□ -0.22
CLK3-218ENST00000566926 CFIP05156 583 aa13.68□□□□□ -0.22
CLK3-218ENST00000566926 SYPP08247 313 aa13.68□□□□□ -0.22
CLK3-218ENST00000566926 GOT1P17174 413 aa13.68□□□□□ -0.22
CLK3-218ENST00000566926 MIPP30301 263 aa13.68□□□□□ -0.22
CLK3-218ENST00000566926 SERPINH1P50454 418 aaKnown RBP13.68□□□□□ -0.22
CLK3-218ENST00000566926 ATXN3P54252 364 aaPredicted RBP13.68□□□□□ -0.22
CLK3-218ENST00000566926 COPS2P61201 443 aa13.68□□□□□ -0.22
CLK3-218ENST00000566926 IRX4P78413 519 aa13.68□□□□□ -0.22
CLK3-218ENST00000566926 ZNF252P-AS1Q0IIN9 211 aa13.68□□□□□ -0.22
CLK3-218ENST00000566926 SEMA3BQ13214 749 aa13.68□□□□□ -0.22
CLK3-218ENST00000566926 BOLA3Q53S33 107 aa13.68□□□□□ -0.22
CLK3-218ENST00000566926 STPG1Q5TH74 334 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms