RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 DSG4Q86SJ6 1040 aa14.36□□□□□ -0.11
PTCH1-226ENST00000553011 ALYREFQ86V81 257 aaKnown RBP14.36□□□□□ -0.11
PTCH1-226ENST00000553011 TXLNBQ8N3L3 684 aa14.36□□□□□ -0.11
PTCH1-226ENST00000553011 RYBPQ8N488 228 aaPredicted RBP14.36□□□□□ -0.11
PTCH1-226ENST00000553011 DCLK2Q8N568 766 aa14.36□□□□□ -0.11
PTCH1-226ENST00000553011 LRRC57Q8N9N7 239 aa14.36□□□□□ -0.11
PTCH1-226ENST00000553011 OR6K2Q8NGY2 324 aa14.36□□□□□ -0.11
PTCH1-226ENST00000553011 GRIN3AQ8TCU5 1115 aa14.36□□□□□ -0.11
PTCH1-226ENST00000553011 CASKIN2Q8WXE0 1202 aa14.36□□□□□ -0.11
PTCH1-226ENST00000553011 KRT35Q92764 455 aa14.36□□□□□ -0.11
PTCH1-226ENST00000553011 CALR3Q96L12 384 aaKnown RBP14.36□□□□□ -0.11
PTCH1-226ENST00000553011 GPR174Q9BXC1 333 aa14.36□□□□□ -0.11
PTCH1-226ENST00000553011 SP110Q9HB58 689 aa14.36□□□□□ -0.11
PTCH1-226ENST00000553011 DDX56Q9NY93 547 aaKnown RBP14.36□□□□□ -0.11
PTCH1-226ENST00000553011 NCDNQ9UBB6 729 aa14.36□□□□□ -0.11
PTCH1-226ENST00000553011 HECAQ9UBI9 543 aaPredicted RBP14.36□□□□□ -0.11
PTCH1-226ENST00000553011 LHX3Q9UBR4 397 aa14.36□□□□□ -0.11
PTCH1-226ENST00000553011 SCML1Q9UN30 329 aa14.36□□□□□ -0.11
PTCH1-226ENST00000553011 WASF2Q9Y6W5 498 aa14.36□□□□□ -0.11
PTCH1-226ENST00000553011 USP34Q70CQ2 3546 aa14.35□□□□□ -0.11
PTCH1-226ENST00000553011 C1QTNF3-AMACRE9PGA6 284 aa14.35□□□□□ -0.11
PTCH1-226ENST00000553011 NDUFS2O75306 463 aa14.35□□□□□ -0.11
PTCH1-226ENST00000553011 RNASEH2AO75792 299 aaKnown RBP14.35□□□□□ -0.11
PTCH1-226ENST00000553011 EPN2O95208 641 aa14.35□□□□□ -0.11
PTCH1-226ENST00000553011 GSRP00390 522 aa14.35□□□□□ -0.11
PTCH1-226ENST00000553011 PTGER3P43115 390 aa14.35□□□□□ -0.11
PTCH1-226ENST00000553011 SNRPD1P62314 119 aaKnown RBP14.35□□□□□ -0.11
PTCH1-226ENST00000553011 GBE1Q04446 702 aa14.35□□□□□ -0.11
PTCH1-226ENST00000553011 IL10RBQ08334 325 aa14.35□□□□□ -0.11
PTCH1-226ENST00000553011 LLGL1Q15334 1064 aa14.35□□□□□ -0.11
PTCH1-226ENST00000553011 ODF2Q5BJF6 829 aa14.35□□□□□ -0.11
PTCH1-226ENST00000553011 ARSIQ5FYB1 569 aa14.35□□□□□ -0.11
PTCH1-226ENST00000553011 USP30Q70CQ3 517 aa14.35□□□□□ -0.11
PTCH1-226ENST00000553011 VSIG1Q86XK7 387 aa14.35□□□□□ -0.11
PTCH1-226ENST00000553011 SLC41A1Q8IVJ1 513 aa14.35□□□□□ -0.11
PTCH1-226ENST00000553011 HDDC3Q8N4P3 179 aa14.35□□□□□ -0.11
PTCH1-226ENST00000553011 OR2AP1Q8NGE2 309 aa14.35□□□□□ -0.11
PTCH1-226ENST00000553011 KIAA1524Q8TCG1 905 aa14.35□□□□□ -0.11
PTCH1-226ENST00000553011 ARRDC3Q96B67 414 aa14.35□□□□□ -0.11
PTCH1-226ENST00000553011 EXOC2Q96KP1 924 aa14.35□□□□□ -0.11
PTCH1-226ENST00000553011 OMDQ99983 421 aa14.35□□□□□ -0.11
PTCH1-226ENST00000553011 HEPHQ9BQS7 1158 aa14.35□□□□□ -0.11
PTCH1-226ENST00000553011 NEUROG2Q9H2A3 272 aa14.35□□□□□ -0.11
PTCH1-226ENST00000553011 ZDHHC6Q9H6R6 413 aa14.35□□□□□ -0.11
PTCH1-226ENST00000553011 IL36AQ9UHA7 158 aa14.35□□□□□ -0.11
PTCH1-226ENST00000553011 GMEB2Q9UKD1 530 aa14.35□□□□□ -0.11
PTCH1-226ENST00000553011 NCKAP1Q9Y2A7 1128 aa14.35□□□□□ -0.11
PTCH1-226ENST00000553011 ADAMTS9Q9P2N4 1935 aa14.35□□□□□ -0.11
PTCH1-226ENST00000553011 SPTBN4Q9H254 2564 aa14.34□□□□□ -0.11
PTCH1-226ENST00000553011 PLXNA2O75051 1894 aa14.34□□□□□ -0.11
PTCH1-226ENST00000553011 ZNF487B1APH4 448 aa14.34□□□□□ -0.11
PTCH1-226ENST00000553011 KPNA3O00505 521 aaPredicted RBP14.34□□□□□ -0.11
PTCH1-226ENST00000553011 MAFKO60675 156 aa14.34□□□□□ -0.11
PTCH1-226ENST00000553011 LEFTY1O75610 366 aa14.34□□□□□ -0.11
PTCH1-226ENST00000553011 PALMO75781 387 aa14.34□□□□□ -0.11
PTCH1-226ENST00000553011 PRNPP04156 253 aa14.34□□□□□ -0.11
PTCH1-226ENST00000553011 RETP07949 1114 aa14.34□□□□□ -0.11
PTCH1-226ENST00000553011 CDKN2BP42772 138 aa14.34□□□□□ -0.11
PTCH1-226ENST00000553011 CREB5Q02930 508 aa14.34□□□□□ -0.11
PTCH1-226ENST00000553011 GALNT2Q10471 571 aa14.34□□□□□ -0.11
PTCH1-226ENST00000553011 CNTN1Q12860 1018 aa14.34□□□□□ -0.11
PTCH1-226ENST00000553011 SLC10A2Q12908 348 aaPredicted RBP14.34□□□□□ -0.11
PTCH1-226ENST00000553011 FAM46CQ5VWP2 391 aa14.34□□□□□ -0.11
PTCH1-226ENST00000553011 SLC9A4Q6AI14 798 aa14.34□□□□□ -0.11
PTCH1-226ENST00000553011 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP14.34□□□□□ -0.11
PTCH1-226ENST00000553011 RFX6Q8HWS3 928 aa14.34□□□□□ -0.11
PTCH1-226ENST00000553011 PLPP6Q8IY26 295 aa14.34□□□□□ -0.11
PTCH1-226ENST00000553011 KATNAL2Q8IYT4 538 aa14.34□□□□□ -0.11
PTCH1-226ENST00000553011 ATPAF2Q8N5M1 289 aa14.34□□□□□ -0.11
PTCH1-226ENST00000553011 PLD5Q8N7P1 536 aa14.34□□□□□ -0.11
PTCH1-226ENST00000553011 TMIEQ8NEW7 156 aa14.34□□□□□ -0.11
PTCH1-226ENST00000553011 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.34□□□□□ -0.11
PTCH1-226ENST00000553011 LRRN4Q8WUT4 740 aa14.34□□□□□ -0.11
PTCH1-226ENST00000553011 RUBCNQ92622 972 aa14.34□□□□□ -0.11
PTCH1-226ENST00000553011 VOPP1Q96AW1 172 aa14.34□□□□□ -0.11
PTCH1-226ENST00000553011 LOXL4Q96JB6 756 aa14.34□□□□□ -0.11
PTCH1-226ENST00000553011 HSPA12BQ96MM6 686 aa14.34□□□□□ -0.11
PTCH1-226ENST00000553011 GDAP1L1Q96MZ0 367 aa14.34□□□□□ -0.11
PTCH1-226ENST00000553011 HINFPQ9BQA5 517 aa14.34□□□□□ -0.11
PTCH1-226ENST00000553011 BTBD1Q9H0C5 482 aa14.34□□□□□ -0.11
PTCH1-226ENST00000553011 ARRDC1-AS1Q9H2J1 176 aa14.34□□□□□ -0.11
PTCH1-226ENST00000553011 C6orf106Q9H6K1 298 aaPredicted RBP14.34□□□□□ -0.11
PTCH1-226ENST00000553011 EVLQ9UI08 416 aaPredicted RBP14.34□□□□□ -0.11
PTCH1-226ENST00000553011 GUCA1BQ9UMX6 200 aa14.34□□□□□ -0.11
PTCH1-226ENST00000553011 CAPN6Q9Y6Q1 641 aa14.34□□□□□ -0.11
PTCH1-226ENST00000553011 TP53BP1Q12888 1972 aaPredicted RBP14.33□□□□□ -0.12
PTCH1-226ENST00000553011 KRIT1O00522 736 aa14.33□□□□□ -0.12
PTCH1-226ENST00000553011 INSIG1O15503 277 aa14.33□□□□□ -0.12
PTCH1-226ENST00000553011 SEMA4FO95754 770 aa14.33□□□□□ -0.12
PTCH1-226ENST00000553011 FTCDO95954 541 aa14.33□□□□□ -0.12
PTCH1-226ENST00000553011 IGSF6O95976 241 aa14.33□□□□□ -0.12
PTCH1-226ENST00000553011 PEX11BO96011 259 aa14.33□□□□□ -0.12
PTCH1-226ENST00000553011 CCDC175P0C221 793 aa14.33□□□□□ -0.12
PTCH1-226ENST00000553011 KRT10P13645 584 aa14.33□□□□□ -0.12
PTCH1-226ENST00000553011 CTNNA1P35221 906 aaKnown RBP14.33□□□□□ -0.12
PTCH1-226ENST00000553011 RGRP47804 291 aa14.33□□□□□ -0.12
PTCH1-226ENST00000553011 DYNLT1P63172 113 aa14.33□□□□□ -0.12
PTCH1-226ENST00000553011 ZNF33AQ06730 810 aa14.33□□□□□ -0.12
PTCH1-226ENST00000553011 SLC10A7Q0GE19 358 aa14.33□□□□□ -0.12
PTCH1-226ENST00000553011 SFSWAPQ12872 951 aaKnown RBP14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms