RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 BFSP2Q13515 415 aa13.02□□□□□ -0.32
SFSWAP-209ENST00000540469 HERC3Q15034 1050 aa13.02□□□□□ -0.32
SFSWAP-209ENST00000540469 GOLGA7BQ2TAP0 167 aa13.02□□□□□ -0.32
SFSWAP-209ENST00000540469 SPANXN3Q5MJ09 141 aa13.02□□□□□ -0.32
SFSWAP-209ENST00000540469 TMEM214Q6NUQ4 689 aaKnown RBP13.02□□□□□ -0.32
SFSWAP-209ENST00000540469 AFAP1L2Q8N4X5 818 aa13.02□□□□□ -0.32
SFSWAP-209ENST00000540469 NSUN6Q8TEA1 469 aaKnown RBP13.02□□□□□ -0.32
SFSWAP-209ENST00000540469 TAMM41Q96BW9 452 aa13.02□□□□□ -0.32
SFSWAP-209ENST00000540469 QKIQ96PU8 341 aaKnown RBP eCLIP13.02□□□□□ -0.32
SFSWAP-209ENST00000540469 KLHL25Q9H0H3 589 aa13.02□□□□□ -0.32
SFSWAP-209ENST00000540469 CROTQ9UKG9 612 aa13.02□□□□□ -0.32
SFSWAP-209ENST00000540469 ADAM28Q9UKQ2 775 aa13.02□□□□□ -0.32
SFSWAP-209ENST00000540469 TMED5Q9Y3A6 229 aa13.02□□□□□ -0.32
SFSWAP-209ENST00000540469 ADGRA2Q96PE1 1338 aa13.02□□□□□ -0.33
SFSWAP-209ENST00000540469 GPR25O00155 361 aa13.02□□□□□ -0.33
SFSWAP-209ENST00000540469 KCNK1O00180 336 aa13.02□□□□□ -0.33
SFSWAP-209ENST00000540469 WDR46O15213 610 aaKnown RBP13.02□□□□□ -0.33
SFSWAP-209ENST00000540469 CNOT3O75175 753 aaKnown RBP13.02□□□□□ -0.33
SFSWAP-209ENST00000540469 DDHD2O94830 711 aa13.02□□□□□ -0.33
SFSWAP-209ENST00000540469 VDRP11473 427 aa13.02□□□□□ -0.33
SFSWAP-209ENST00000540469 ADSLP30566 484 aaPredicted RBP13.02□□□□□ -0.33
SFSWAP-209ENST00000540469 ITGA7Q13683 1181 aa13.02□□□□□ -0.33
SFSWAP-209ENST00000540469 NIPAL1Q6NVV3 410 aa13.02□□□□□ -0.33
SFSWAP-209ENST00000540469 CYS1Q717R9 158 aa13.02□□□□□ -0.33
SFSWAP-209ENST00000540469 LYSMD3Q7Z3D4 306 aa13.02□□□□□ -0.33
SFSWAP-209ENST00000540469 C7orf31Q8N865 590 aa13.02□□□□□ -0.33
SFSWAP-209ENST00000540469 C17orf50Q8WW18 174 aa13.02□□□□□ -0.33
SFSWAP-209ENST00000540469 FBXL20Q96IG2 436 aa13.02□□□□□ -0.33
SFSWAP-209ENST00000540469 VPS39Q96JC1 886 aa13.02□□□□□ -0.33
SFSWAP-209ENST00000540469 CDHR1Q96JP9 859 aa13.02□□□□□ -0.33
SFSWAP-209ENST00000540469 DTLQ9NZJ0 730 aa13.02□□□□□ -0.33
SFSWAP-209ENST00000540469 PRORSD1PA6NEY8 169 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 SLC22A2O15244 555 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 CLASP2O75122 1294 aaKnown RBP13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 HNRNPLP14866 589 aaKnown RBP eCLIP13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 LRPAP1P30533 357 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 POU5F1BQ06416 359 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 PLCL1Q15111 1095 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 SAMD4BQ5PRF9 694 aaKnown RBP13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 ZPBP2Q6X784 338 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 IFNEQ86WN2 208 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 LRRC71Q8N4P6 559 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 SLC15A4Q8N697 577 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 C12orf29Q8N999 325 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 TERB1Q8NA31 727 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 ARNTL2Q8WYA1 636 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 SLC38A10Q9HBR0 1119 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 HESX1Q9UBX0 185 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 EGFL7Q9UHF1 273 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 UBDO15205 165 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 GOT1P17174 413 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 NR2C2P49116 596 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 NDST1P52848 882 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 TPD52P55327 224 aaPredicted RBP13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 STX1BP61266 288 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 CTBSQ01459 385 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 MERTKQ12866 999 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 INPP5AQ14642 412 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 RFTN1Q14699 578 aaPredicted RBP13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 MOGQ16653 247 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 REP15Q6BDI9 236 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 ABHD15Q6UXT9 468 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 ZC3H7AQ8IWR0 971 aaKnown RBP13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 ZC3H15Q8WU90 426 aaKnown RBP13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 MFSD3Q96ES6 412 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 NRBF2Q96F24 287 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 CCDC138Q96M89 665 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 BEGAINQ9BUH8 593 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 NPLQ9BXD5 320 aaPredicted RBP13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 ING2Q9H160 280 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 ZFYVE28Q9HCC9 887 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 CYP4F12Q9HCS2 524 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 VANGL2Q9ULK5 521 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 PCDHGA7Q9Y5G6 932 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 SNX9Q9Y5X1 595 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 MAFGO15525 162 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 CHRNA5P30532 468 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 OCA2Q04671 838 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 GEN1Q17RS7 908 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 KIF19Q2TAC6 998 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 ZNF618Q5T7W0 954 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 ABRAXAS1Q6UWZ7 409 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 KCNMB4Q86W47 210 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 RNF135Q8IUD6 432 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 BPIFB6Q8NFQ5 453 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 FAM151AQ8WW52 585 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 TFAP2CQ92754 450 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 WNK4Q96J92 1243 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 B3GNT5Q9BYG0 378 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 DEFB129Q9H1M3 183 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 NRBP2Q9NSY0 501 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 TUBA8Q9NY65 449 aaPredicted RBP13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 XPR1Q9UBH6 696 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 FZD1Q9UP38 647 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 V9GYQ6 96 aa13.01□□□□□ -0.33
SFSWAP-209ENST00000540469 KPNA4O00629 521 aaPredicted RBP13□□□□□ -0.33
SFSWAP-209ENST00000540469 CABYRO75952 493 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 KCNH1O95259 989 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 C8BP07358 591 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 HOXC6P09630 235 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms