RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 SYNJ2BP-COX16A0A087WUM0 186 aa11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 E5RJQ4 531 aa11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 TMX2-CTNND1H3BSU7 103 aa11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 NTN3O00634 580 aaPredicted RBP11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 PLD2O14939 933 aa11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 CASC3O15234 703 aaKnown RBP11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 SPINT1O43278 529 aa11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 SNAP91O60641 907 aa11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 GCATO75600 419 aa11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 LEFTY1O75610 366 aa11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 ADRB3P13945 408 aa11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 RRM1P23921 792 aa11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 PRCPP42785 496 aa11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 RECQLP46063 649 aaPredicted RBP11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 NEK3P51956 506 aa11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 ADKP55263 362 aaKnown RBP11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 EIF2B5Q13144 721 aaKnown RBP11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 EIF3IQ13347 325 aaKnown RBP11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 TAF5Q15542 800 aa11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 TGIF1Q15583 401 aa11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 MEA1Q16626 185 aa11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 RRAGAQ7L523 313 aa11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 RAB11FIP2Q7L804 512 aa11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 ZSCAN30Q86W11 494 aa11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 SLC35F3Q8IY50 421 aa11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 DEFB106AQ8N104 65 aa11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 FBXO39Q8N4B4 442 aa11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 LMO3Q8TAP4 145 aa11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 GRIN3AQ8TCU5 1115 aa11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 TSG101Q99816 390 aa11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 C1QTNF2Q9BXJ5 285 aa11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 DDIT4Q9NX09 232 aa11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 COX16Q9P0S2 106 aa11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 VPS51Q9UID3 782 aa11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 PADI4Q9UM07 663 aa11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 FADS3Q9Y5Q0 445 aa11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 HS3ST4Q9Y661 456 aa11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 TLN1Q9Y490 2541 aaKnown RBP11.87□□□□□ -0.51
CLSTN3-209ENST00000539982 AHCTF1Q8WYP5 2266 aa11.86□□□□□ -0.51
CLSTN3-209ENST00000539982 LMO7DNF2Z398 122 aa11.86□□□□□ -0.51
CLSTN3-209ENST00000539982 YY2O15391 372 aa11.86□□□□□ -0.51
CLSTN3-209ENST00000539982 MED7O43513 233 aa11.86□□□□□ -0.51
CLSTN3-209ENST00000539982 AP1G1O43747 822 aa11.86□□□□□ -0.51
CLSTN3-209ENST00000539982 CNTN5O94779 1100 aa11.86□□□□□ -0.51
CLSTN3-209ENST00000539982 ANXA6P08133 673 aa11.86□□□□□ -0.51
CLSTN3-209ENST00000539982 GLI1P08151 1106 aa11.86□□□□□ -0.51
CLSTN3-209ENST00000539982 FAM87AP0C7U9 286 aa11.86□□□□□ -0.51
CLSTN3-209ENST00000539982 ITGB7P26010 798 aa11.86□□□□□ -0.51
CLSTN3-209ENST00000539982 L1CAMP32004 1257 aa11.86□□□□□ -0.51
CLSTN3-209ENST00000539982 UGT1A5P35504 534 aa11.86□□□□□ -0.51
CLSTN3-209ENST00000539982 PFN3P60673 137 aa11.86□□□□□ -0.51
CLSTN3-209ENST00000539982 GCNT1Q02742 428 aa11.86□□□□□ -0.51
CLSTN3-209ENST00000539982 CETN1Q12798 172 aa11.86□□□□□ -0.51
CLSTN3-209ENST00000539982 C1orf61Q13536 156 aa11.86□□□□□ -0.51
CLSTN3-209ENST00000539982 PTK2BQ14289 1009 aa11.86□□□□□ -0.51
CLSTN3-209ENST00000539982 TPRG1LQ5T0D9 272 aa11.86□□□□□ -0.51
CLSTN3-209ENST00000539982 ESRP1Q6NXG1 681 aaKnown RBP11.86□□□□□ -0.51
CLSTN3-209ENST00000539982 DPY19L3Q6ZPD9 716 aa11.86□□□□□ -0.51
CLSTN3-209ENST00000539982 JAMLQ86YT9 394 aa11.86□□□□□ -0.51
CLSTN3-209ENST00000539982 ASB12Q8WXK4 309 aa11.86□□□□□ -0.51
CLSTN3-209ENST00000539982 TBATAQ96M53 351 aa11.86□□□□□ -0.51
CLSTN3-209ENST00000539982 SLC2A13Q96QE2 648 aa11.86□□□□□ -0.51
CLSTN3-209ENST00000539982 TNKS2Q9H2K2 1166 aa11.86□□□□□ -0.51
CLSTN3-209ENST00000539982 ANKMY1Q9P2S6 941 aa11.86□□□□□ -0.51
CLSTN3-209ENST00000539982 SEPT3Q9UH03 358 aa11.86□□□□□ -0.51
CLSTN3-209ENST00000539982 APOBEC3BQ9UH17 382 aaKnown RBP11.86□□□□□ -0.51
CLSTN3-209ENST00000539982 CNTN6Q9UQ52 1028 aa11.86□□□□□ -0.51
CLSTN3-209ENST00000539982 WASF2Q9Y6W5 498 aa11.86□□□□□ -0.51
CLSTN3-209ENST00000539982 IGLON5A6NGN9 336 aa11.85□□□□□ -0.51
CLSTN3-209ENST00000539982 NVLO15381 856 aaKnown RBP11.85□□□□□ -0.51
CLSTN3-209ENST00000539982 P4HA2O15460 535 aa11.85□□□□□ -0.51
CLSTN3-209ENST00000539982 TSPAN6O43657 245 aa11.85□□□□□ -0.51
CLSTN3-209ENST00000539982 PAGE1O75459 146 aa11.85□□□□□ -0.51
CLSTN3-209ENST00000539982 ZNF821O75541 412 aaPredicted RBP11.85□□□□□ -0.51
CLSTN3-209ENST00000539982 ENDOD1O94919 500 aa11.85□□□□□ -0.51
CLSTN3-209ENST00000539982 RHOCP08134 193 aa11.85□□□□□ -0.51
CLSTN3-209ENST00000539982 LIPCP11150 499 aa11.85□□□□□ -0.51
CLSTN3-209ENST00000539982 PMS1P54277 932 aaKnown RBP11.85□□□□□ -0.51
CLSTN3-209ENST00000539982 SRSF6Q13247 344 aaKnown RBP11.85□□□□□ -0.51
CLSTN3-209ENST00000539982 PKP1Q13835 747 aa11.85□□□□□ -0.51
CLSTN3-209ENST00000539982 TBR1Q16650 682 aa11.85□□□□□ -0.51
CLSTN3-209ENST00000539982 ALFQ53S48 1182 aa11.85□□□□□ -0.51
CLSTN3-209ENST00000539982 COBLL1Q53SF7 1204 aa11.85□□□□□ -0.51
CLSTN3-209ENST00000539982 PRRT3Q5FWE3 981 aa11.85□□□□□ -0.51
CLSTN3-209ENST00000539982 EFHC1Q5JVL4 640 aa11.85□□□□□ -0.51
CLSTN3-209ENST00000539982 C22orf39Q6P5X5 142 aa11.85□□□□□ -0.51
CLSTN3-209ENST00000539982 LINGO4Q6UY18 593 aa11.85□□□□□ -0.51
CLSTN3-209ENST00000539982 B3GNT8Q7Z7M8 397 aa11.85□□□□□ -0.51
CLSTN3-209ENST00000539982 SETD3Q86TU7 594 aaPredicted RBP11.85□□□□□ -0.51
CLSTN3-209ENST00000539982 ARHGEF19Q8IW93 802 aa11.85□□□□□ -0.51
CLSTN3-209ENST00000539982 RBFAQ8N0V3 343 aa11.85□□□□□ -0.51
CLSTN3-209ENST00000539982 DCAF4L2Q8NA75 395 aa11.85□□□□□ -0.51
CLSTN3-209ENST00000539982 ZNF606Q8WXB4 792 aa11.85□□□□□ -0.51
CLSTN3-209ENST00000539982 SPATA32Q96LK8 384 aa11.85□□□□□ -0.51
CLSTN3-209ENST00000539982 HEPHQ9BQS7 1158 aa11.85□□□□□ -0.51
CLSTN3-209ENST00000539982 STRADBQ9C0K7 418 aa11.85□□□□□ -0.51
CLSTN3-209ENST00000539982 SIK2Q9H0K1 926 aa11.85□□□□□ -0.51
CLSTN3-209ENST00000539982 TCEAL2Q9H3H9 227 aaPredicted RBP11.85□□□□□ -0.51
CLSTN3-209ENST00000539982 SYNDIG1Q9H7V2 258 aa11.85□□□□□ -0.51
CLSTN3-209ENST00000539982 EPB41L5Q9HCM4 733 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms