RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 DGKDQ16760 1214 aa20.59■□□□□ 0.89
TMEM260-203ENST00000539559 FAM187BQ17R55 369 aa20.59■□□□□ 0.89
TMEM260-203ENST00000539559 SLC25A52Q3SY17 297 aa20.59■□□□□ 0.89
TMEM260-203ENST00000539559 STRADAQ7RTN6 431 aa20.59■□□□□ 0.89
TMEM260-203ENST00000539559 DENND6AQ8IWF6 608 aa20.59■□□□□ 0.89
TMEM260-203ENST00000539559 CAAP1Q9H8G2 361 aa20.59■□□□□ 0.89
TMEM260-203ENST00000539559 DNAAF2Q9NVR5 837 aaKnown RBP20.59■□□□□ 0.89
TMEM260-203ENST00000539559 ERAP1Q9NZ08 941 aa20.59■□□□□ 0.89
TMEM260-203ENST00000539559 TLL2Q9Y6L7 1015 aa20.59■□□□□ 0.89
TMEM260-203ENST00000539559 DNAH12Q6ZR08 3092 aa20.59■□□□□ 0.89
TMEM260-203ENST00000539559 A0A0J9YVX5 310 aa20.58■□□□□ 0.89
TMEM260-203ENST00000539559 LRRC37A2A6NM11 1700 aa20.58■□□□□ 0.89
TMEM260-203ENST00000539559 E7ENX8 843 aa20.58■□□□□ 0.89
TMEM260-203ENST00000539559 PLOD2O00469 737 aa20.58■□□□□ 0.89
TMEM260-203ENST00000539559 PSMC3P17980 439 aa20.58■□□□□ 0.89
TMEM260-203ENST00000539559 GABRB3P28472 473 aa20.58■□□□□ 0.89
TMEM260-203ENST00000539559 CDH15P55291 814 aa20.58■□□□□ 0.89
TMEM260-203ENST00000539559 MPP1Q00013 466 aa20.58■□□□□ 0.89
TMEM260-203ENST00000539559 TMEM259Q4ZIN3 620 aa20.58■□□□□ 0.89
TMEM260-203ENST00000539559 CENPLQ8N0S6 344 aaPredicted RBP20.58■□□□□ 0.89
TMEM260-203ENST00000539559 NXNL1Q96CM4 212 aa20.58■□□□□ 0.89
TMEM260-203ENST00000539559 SLC29A1Q99808 456 aa20.58■□□□□ 0.89
TMEM260-203ENST00000539559 EPS15L1Q9UBC2 864 aa20.58■□□□□ 0.89
TMEM260-203ENST00000539559 ASB14A6NK59 587 aa20.58■□□□□ 0.88
TMEM260-203ENST00000539559 STRNO43815 780 aa20.58■□□□□ 0.88
TMEM260-203ENST00000539559 SLC35E2BP0CK96 405 aa20.58■□□□□ 0.88
TMEM260-203ENST00000539559 CDH2P19022 906 aaPredicted RBP20.58■□□□□ 0.88
TMEM260-203ENST00000539559 GNL1P36915 607 aaPredicted RBP20.58■□□□□ 0.88
TMEM260-203ENST00000539559 SH2D4BQ5SQS7 431 aa20.58■□□□□ 0.88
TMEM260-203ENST00000539559 CCT7Q99832 543 aa20.58■□□□□ 0.88
TMEM260-203ENST00000539559 FTHL17Q9BXU8 183 aa20.58■□□□□ 0.88
TMEM260-203ENST00000539559 TRPV6Q9H1D0 765 aa20.58■□□□□ 0.88
TMEM260-203ENST00000539559 PDHXO00330 501 aa20.57■□□□□ 0.88
TMEM260-203ENST00000539559 PRKAA1Q13131 559 aa20.57■□□□□ 0.88
TMEM260-203ENST00000539559 TMED1Q13445 227 aa20.57■□□□□ 0.88
TMEM260-203ENST00000539559 CEP97Q8IW35 865 aa20.57■□□□□ 0.88
TMEM260-203ENST00000539559 NUP93Q8N1F7 819 aa20.57■□□□□ 0.88
TMEM260-203ENST00000539559 GAB3Q8WWW8 586 aa20.57■□□□□ 0.88
TMEM260-203ENST00000539559 SLC2A11Q9BYW1 496 aa20.57■□□□□ 0.88
TMEM260-203ENST00000539559 CASS4Q9NQ75 786 aa20.57■□□□□ 0.88
TMEM260-203ENST00000539559 SETD4Q9NVD3 440 aa20.57■□□□□ 0.88
TMEM260-203ENST00000539559 GTSE1Q9NYZ3 720 aa20.57■□□□□ 0.88
TMEM260-203ENST00000539559 SNX13Q9Y5W8 968 aa20.57■□□□□ 0.88
TMEM260-203ENST00000539559 TRMUO75648 421 aaKnown RBP20.57■□□□□ 0.88
TMEM260-203ENST00000539559 SNX16P57768 344 aa20.57■□□□□ 0.88
TMEM260-203ENST00000539559 DPYSQ14117 519 aa20.57■□□□□ 0.88
TMEM260-203ENST00000539559 MTX3Q5HYI7 312 aa20.57■□□□□ 0.88
TMEM260-203ENST00000539559 PITRM1Q5JRX3 1037 aa20.57■□□□□ 0.88
TMEM260-203ENST00000539559 TSTD2Q5T7W7 516 aa20.57■□□□□ 0.88
TMEM260-203ENST00000539559 ARHGAP17Q68EM7 881 aa20.57■□□□□ 0.88
TMEM260-203ENST00000539559 IL31Q6EBC2 164 aa20.57■□□□□ 0.88
TMEM260-203ENST00000539559 ZC3HC1Q86WB0 502 aaKnown RBP20.57■□□□□ 0.88
TMEM260-203ENST00000539559 MFSD6LQ8IWD5 586 aa20.57■□□□□ 0.88
TMEM260-203ENST00000539559 CPSF7Q8N684 471 aaKnown RBP20.57■□□□□ 0.88
TMEM260-203ENST00000539559 TRIML2Q8N7C3 387 aa20.57■□□□□ 0.88
TMEM260-203ENST00000539559 TSPAN14Q8NG11 270 aa20.57■□□□□ 0.88
TMEM260-203ENST00000539559 AFG1LQ8WV93 481 aa20.57■□□□□ 0.88
TMEM260-203ENST00000539559 SNRNP27Q8WVK2 155 aaKnown RBP20.57■□□□□ 0.88
TMEM260-203ENST00000539559 CIB1Q99828 191 aa20.57■□□□□ 0.88
TMEM260-203ENST00000539559 NFKBIZQ9BYH8 718 aa20.57■□□□□ 0.88
TMEM260-203ENST00000539559 CYP4F12Q9HCS2 524 aa20.57■□□□□ 0.88
TMEM260-203ENST00000539559 TNFRSF12AQ9NP84 129 aa20.57■□□□□ 0.88
TMEM260-203ENST00000539559 SLC45A1Q9Y2W3 748 aa20.57■□□□□ 0.88
TMEM260-203ENST00000539559 DCLK1O15075 740 aa20.56■□□□□ 0.88
TMEM260-203ENST00000539559 TIMM44O43615 452 aa20.56■□□□□ 0.88
TMEM260-203ENST00000539559 STAU1O95793 577 aaKnown RBP20.56■□□□□ 0.88
TMEM260-203ENST00000539559 AHSGP02765 367 aa20.56■□□□□ 0.88
TMEM260-203ENST00000539559 PDAP1Q13442 181 aaKnown RBP20.56■□□□□ 0.88
TMEM260-203ENST00000539559 TTLL4Q14679 1199 aa20.56■□□□□ 0.88
TMEM260-203ENST00000539559 PPP1R3AQ16821 1122 aa20.56■□□□□ 0.88
TMEM260-203ENST00000539559 ANO4Q32M45 955 aa20.56■□□□□ 0.88
TMEM260-203ENST00000539559 OTOP3Q7RTS5 596 aa20.56■□□□□ 0.88
TMEM260-203ENST00000539559 TTC39CQ8N584 583 aa20.56■□□□□ 0.88
TMEM260-203ENST00000539559 CATSPER1Q8NEC5 780 aa20.56■□□□□ 0.88
TMEM260-203ENST00000539559 SLC7A14Q8TBB6 771 aa20.56■□□□□ 0.88
TMEM260-203ENST00000539559 CELF6Q96J87 481 aaKnown RBP20.56■□□□□ 0.88
TMEM260-203ENST00000539559 LGALS2P05162 132 aa20.56■□□□□ 0.88
TMEM260-203ENST00000539559 NR1H2P55055 460 aa20.56■□□□□ 0.88
TMEM260-203ENST00000539559 SH3BGRP55822 239 aaPredicted RBP20.56■□□□□ 0.88
TMEM260-203ENST00000539559 PSME3P61289 254 aa20.56■□□□□ 0.88
TMEM260-203ENST00000539559 KDM1BQ8NB78 822 aa20.56■□□□□ 0.88
TMEM260-203ENST00000539559 MS4A4AQ96JQ5 239 aa20.56■□□□□ 0.88
TMEM260-203ENST00000539559 SLC39A3Q9BRY0 314 aa20.56■□□□□ 0.88
TMEM260-203ENST00000539559 CCDC167Q9P0B6 97 aa20.56■□□□□ 0.88
TMEM260-203ENST00000539559 PCDHGA7Q9Y5G6 932 aa20.56■□□□□ 0.88
TMEM260-203ENST00000539559 CROCCQ5TZA2 2017 aa20.56■□□□□ 0.88
TMEM260-203ENST00000539559 CENPFP49454 3210 aa20.56■□□□□ 0.88
TMEM260-203ENST00000539559 CCL15-CCL14A0A0B4J2E2 113 aa20.55■□□□□ 0.88
TMEM260-203ENST00000539559 PGK1P00558 417 aa20.55■□□□□ 0.88
TMEM260-203ENST00000539559 CKMT2P17540 419 aa20.55■□□□□ 0.88
TMEM260-203ENST00000539559 CYP2B6P20813 491 aa20.55■□□□□ 0.88
TMEM260-203ENST00000539559 IGFBP6P24592 240 aaPredicted RBP20.55■□□□□ 0.88
TMEM260-203ENST00000539559 CCL15Q16663 113 aa20.55■□□□□ 0.88
TMEM260-203ENST00000539559 LRRC8EQ6NSJ5 796 aa20.55■□□□□ 0.88
TMEM260-203ENST00000539559 CNSTQ6PJW8 725 aa20.55■□□□□ 0.88
TMEM260-203ENST00000539559 KDELC2Q7Z4H8 507 aa20.55■□□□□ 0.88
TMEM260-203ENST00000539559 NT5DC4Q86YG4 428 aa20.55■□□□□ 0.88
TMEM260-203ENST00000539559 CHERPQ8IWX8 916 aaKnown RBP20.55■□□□□ 0.88
TMEM260-203ENST00000539559 SPATA22Q8NHS9 363 aa20.55■□□□□ 0.88
TMEM260-203ENST00000539559 HMGCLL1Q8TB92 370 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms