RNA–Protein interactions for RNA: ENST00000536483.1

PRKDC-207, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 2

Gene PRKDC, Length 834 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-207ENST00000536483 PARVAQ9NVD7 372 aa12.72□□□□□ -0.37
PRKDC-207ENST00000536483 TMEM248Q9NWD8 314 aa12.72□□□□□ -0.37
PRKDC-207ENST00000536483 VPS51Q9UID3 782 aa12.72□□□□□ -0.37
PRKDC-207ENST00000536483 SNX10Q9Y5X0 201 aa12.72□□□□□ -0.37
PRKDC-207ENST00000536483 TBC1D3DA0A087WVF3 549 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 TBC1D3IA0A087WXS9 549 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 TBC1D3EA0A087X179 549 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 TBC1D3KA0A087X1G2 549 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 A0A0D9SEW6 157 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 ANKRD62A6NC57 917 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 TBC1D3FA6NER0 549 aaPredicted RBP12.71□□□□□ -0.37
PRKDC-207ENST00000536483 TMEM191CA6NGB0 347 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 WASH4PA8MWX3 477 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 EIF3CLB5ME19 914 aaKnown RBP12.71□□□□□ -0.37
PRKDC-207ENST00000536483 TBC1D3LB9A6J9 549 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 FAM72CH0Y354 149 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 GOLGA6L19H0YKK7 550 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 TLR4O00206 839 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 SLC7A4O43246 635 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 SRGAP2O75044 1071 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 RFPL3O75679 317 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 LRIG2O94898 1065 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 PLEKP08567 350 aaPredicted RBP12.71□□□□□ -0.37
PRKDC-207ENST00000536483 TBC1D3HP0C7X1 549 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 SRCP12931 536 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 EPHA8P29322 1005 aaPredicted RBP12.71□□□□□ -0.37
PRKDC-207ENST00000536483 HNRNPH3P31942 346 aaKnown RBP12.71□□□□□ -0.37
PRKDC-207ENST00000536483 HTR7P34969 479 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 DRD3P35462 400 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 ETFBP38117 255 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 ARRB1P49407 418 aaPredicted RBP12.71□□□□□ -0.37
PRKDC-207ENST00000536483 ACADVLP49748 655 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 METAP1P53582 386 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 NXPH1P58417 271 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 PPP2CBP62714 309 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 PPP2CAP67775 309 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 GNA12Q03113 381 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 KLHL30Q0D2K2 578 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 DLG2Q15700 870 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 FAM72AQ5TYM5 149 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 TBC1D3GQ6DHY5 549 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 TBC1D3CQ6IPX1 549 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 FAM72DQ6L9T8 149 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.71□□□□□ -0.37
PRKDC-207ENST00000536483 SLFN11Q7Z7L1 901 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 PHLDB2Q86SQ0 1253 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 FAM72BQ86X60 149 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 DRC7Q8IY82 874 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 TBC1D3Q8IZP1 549 aaPredicted RBP12.71□□□□□ -0.37
PRKDC-207ENST00000536483 CCDC185Q8N715 623 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 MCEEQ96PE7 176 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 EIF3CQ99613 913 aaKnown RBP12.71□□□□□ -0.37
PRKDC-207ENST00000536483 CEP44Q9C0F1 390 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 MUC3BQ9H195 1237 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 KDM4CQ9H3R0 1056 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 SEPT11Q9NVA2 429 aaKnown RBP12.71□□□□□ -0.37
PRKDC-207ENST00000536483 SLC25A13Q9UJS0 675 aa12.71□□□□□ -0.37
PRKDC-207ENST00000536483 COL5A1P20908 1838 aaPredicted RBP12.7□□□□□ -0.38
PRKDC-207ENST00000536483 EIF4E1BA6NMX2 242 aaKnown RBP12.7□□□□□ -0.38
PRKDC-207ENST00000536483 YKT6O15498 198 aa12.7□□□□□ -0.38
PRKDC-207ENST00000536483 CCP110O43303 1012 aa12.7□□□□□ -0.38
PRKDC-207ENST00000536483 LATO43561 262 aa12.7□□□□□ -0.38
PRKDC-207ENST00000536483 ZNF821O75541 412 aaPredicted RBP12.7□□□□□ -0.38
PRKDC-207ENST00000536483 MT-CO1P00395 513 aa12.7□□□□□ -0.38
PRKDC-207ENST00000536483 FTLP02792 175 aaPredicted RBP12.7□□□□□ -0.38
PRKDC-207ENST00000536483 C1SP09871 688 aa12.7□□□□□ -0.38
PRKDC-207ENST00000536483 MYBL1P10243 752 aa12.7□□□□□ -0.38
PRKDC-207ENST00000536483 ITPKBP27987 946 aa12.7□□□□□ -0.38
PRKDC-207ENST00000536483 MAT2AP31153 395 aaKnown RBP12.7□□□□□ -0.38
PRKDC-207ENST00000536483 HNF1BP35680 557 aa12.7□□□□□ -0.38
PRKDC-207ENST00000536483 ABCG1P45844 678 aa12.7□□□□□ -0.38
PRKDC-207ENST00000536483 OGDHQ02218 1023 aa12.7□□□□□ -0.38
PRKDC-207ENST00000536483 TARDBPQ13148 414 aaKnown RBP eCLIP12.7□□□□□ -0.38
PRKDC-207ENST00000536483 CDO1Q16878 200 aa12.7□□□□□ -0.38
PRKDC-207ENST00000536483 SLC45A4Q5BKX6 768 aa12.7□□□□□ -0.38
PRKDC-207ENST00000536483 HES3Q5TGS1 186 aa12.7□□□□□ -0.38
PRKDC-207ENST00000536483 FAM46CQ5VWP2 391 aa12.7□□□□□ -0.38
PRKDC-207ENST00000536483 NAPEPLDQ6IQ20 393 aa12.7□□□□□ -0.38
PRKDC-207ENST00000536483 RETSATQ6NUM9 610 aa12.7□□□□□ -0.38
PRKDC-207ENST00000536483 TFAP2DQ7Z6R9 452 aa12.7□□□□□ -0.38
PRKDC-207ENST00000536483 DSG4Q86SJ6 1040 aa12.7□□□□□ -0.38
PRKDC-207ENST00000536483 PRPF39Q86UA1 669 aaKnown RBP12.7□□□□□ -0.38
PRKDC-207ENST00000536483 SPATS2Q86XZ4 545 aaKnown RBP12.7□□□□□ -0.38
PRKDC-207ENST00000536483 PSTKQ8IV42 348 aaKnown RBP12.7□□□□□ -0.38
PRKDC-207ENST00000536483 PIAS4Q8N2W9 510 aaPredicted RBP12.7□□□□□ -0.38
PRKDC-207ENST00000536483 TMIEQ8NEW7 156 aa12.7□□□□□ -0.38
PRKDC-207ENST00000536483 OR2A12Q8NGT7 310 aa12.7□□□□□ -0.38
PRKDC-207ENST00000536483 PIP4K2CQ8TBX8 421 aa12.7□□□□□ -0.38
PRKDC-207ENST00000536483 TSC1Q92574 1164 aa12.7□□□□□ -0.38
PRKDC-207ENST00000536483 ISG20Q96AZ6 181 aaKnown RBP12.7□□□□□ -0.38
PRKDC-207ENST00000536483 TRIM11Q96F44 468 aa12.7□□□□□ -0.38
PRKDC-207ENST00000536483 NCAPGQ9BPX3 1015 aa12.7□□□□□ -0.38
PRKDC-207ENST00000536483 MAGEH1Q9H213 219 aa12.7□□□□□ -0.38
PRKDC-207ENST00000536483 ARHGAP20Q9P2F6 1191 aa12.7□□□□□ -0.38
PRKDC-207ENST00000536483 FZD10Q9ULW2 581 aa12.7□□□□□ -0.38
PRKDC-207ENST00000536483 TP53BP1Q12888 1972 aaPredicted RBP12.7□□□□□ -0.38
PRKDC-207ENST00000536483 FAM170AA1A519 330 aa12.69□□□□□ -0.38
PRKDC-207ENST00000536483 GOLGA6L3A6NEY3 463 aa12.69□□□□□ -0.38
PRKDC-207ENST00000536483 SNAP91O60641 907 aa12.69□□□□□ -0.38
PRKDC-207ENST00000536483 CD160O95971 181 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms