RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 AP2B1P63010 937 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 TMF1P82094 1093 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 SEMA3AQ14563 771 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 BTBD16Q32M84 506 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 TBC1D3GQ6DHY5 549 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 TTLL5Q6EMB2 1281 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 DGAT2L7PQ6IED9 249 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 TBC1D3CQ6IPX1 549 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 KLHL17Q6TDP4 642 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 RTL10Q7L3V2 364 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 DDIASQ8IXT1 998 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 ADGRF4Q8IZF3 695 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 TBC1D3Q8IZP1 549 aaPredicted RBP3.84□□□□□ -1.79
USP48-215ENST00000534705 ENDOVQ8N8Q3 282 aaKnown RBP3.84□□□□□ -1.79
USP48-215ENST00000534705 OR1N1Q8NGS0 311 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 POF1BQ8WVV4 589 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 HMGB4Q8WW32 186 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 CPT1BQ92523 772 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 PPP1R10Q96QC0 940 aaKnown RBP3.84□□□□□ -1.79
USP48-215ENST00000534705 NAP1L4Q99733 375 aaKnown RBP3.84□□□□□ -1.79
USP48-215ENST00000534705 MECRQ9BV79 373 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 PABPC3Q9H361 631 aaKnown RBP3.84□□□□□ -1.79
USP48-215ENST00000534705 DECR2Q9NUI1 292 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 MSRB1Q9NZV6 116 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 NDUFAF4Q9P032 175 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 TAGLN3Q9UI15 199 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 PCDHA12Q9UN75 941 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 SLC12A4Q9UP95 1085 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 SLC8A2Q9UPR5 921 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 BLMP54132 1417 aaPredicted RBP3.84□□□□□ -1.79
USP48-215ENST00000534705 NSD3Q9BZ95 1437 aa3.84□□□□□ -1.79
USP48-215ENST00000534705 ZNF831Q5JPB2 1677 aa3.84□□□□□ -1.8
USP48-215ENST00000534705 UBR2Q8IWV8 1755 aa3.84□□□□□ -1.8
USP48-215ENST00000534705 IGLV5-39A0A0G2JS06 123 aa3.83□□□□□ -1.8
USP48-215ENST00000534705 DPPA5A6NC42 116 aa3.83□□□□□ -1.8
USP48-215ENST00000534705 FAM90A8PA6NJQ4 464 aa3.83□□□□□ -1.8
USP48-215ENST00000534705 KCNJ18B7U540 433 aa3.83□□□□□ -1.8
USP48-215ENST00000534705 PRSS44E7EML9 344 aa3.83□□□□□ -1.8
USP48-215ENST00000534705 F5H423 210 aaPredicted RBP3.83□□□□□ -1.8
USP48-215ENST00000534705 CCER2I3L3R5 266 aa3.83□□□□□ -1.8
USP48-215ENST00000534705 UGDHO60701 494 aa3.83□□□□□ -1.8
USP48-215ENST00000534705 EPN2O95208 641 aa3.83□□□□□ -1.8
USP48-215ENST00000534705 LCKP06239 509 aa3.83□□□□□ -1.8
USP48-215ENST00000534705 FGF2P09038 288 aa3.83□□□□□ -1.8
USP48-215ENST00000534705 FAM90A13PP0C7W8 464 aa3.83□□□□□ -1.8
USP48-215ENST00000534705 FAM90A24PP0C7X0 464 aa3.83□□□□□ -1.8
USP48-215ENST00000534705 TNFRSF1BP20333 461 aa3.83□□□□□ -1.8
USP48-215ENST00000534705 PAX3P23760 479 aa3.83□□□□□ -1.8
USP48-215ENST00000534705 ERV3-1Q14264 604 aa3.83□□□□□ -1.8
USP48-215ENST00000534705 INPP5JQ15735 1006 aaPredicted RBP3.83□□□□□ -1.8
USP48-215ENST00000534705 LEXMQ3ZCV2 418 aa3.83□□□□□ -1.8
USP48-215ENST00000534705 GLIPR1L2Q4G1C9 344 aa3.83□□□□□ -1.8
USP48-215ENST00000534705 PIK3CD-AS1Q5SR53 167 aa3.83□□□□□ -1.8
USP48-215ENST00000534705 TTC39AQ5SRH9 613 aa3.83□□□□□ -1.8
USP48-215ENST00000534705 KRTAP5-4Q6L8H1 288 aa3.83□□□□□ -1.8
USP48-215ENST00000534705 MDGA2Q7Z553 956 aa3.83□□□□□ -1.8
USP48-215ENST00000534705 ENAHQ8N8S7 591 aaPredicted RBP3.83□□□□□ -1.8
USP48-215ENST00000534705 ATG16L2Q8NAA4 619 aa3.83□□□□□ -1.8
USP48-215ENST00000534705 ZNF548Q8NEK5 533 aaPredicted RBP3.83□□□□□ -1.8
USP48-215ENST00000534705 MSI2Q96DH6 328 aaKnown RBP3.83□□□□□ -1.8
USP48-215ENST00000534705 LTV1Q96GA3 475 aaPredicted RBP3.83□□□□□ -1.8
USP48-215ENST00000534705 DDX23Q9BUQ8 820 aaKnown RBP3.83□□□□□ -1.8
USP48-215ENST00000534705 FOXP1Q9H334 677 aaPredicted RBP3.83□□□□□ -1.8
USP48-215ENST00000534705 TASP1Q9H6P5 420 aa3.83□□□□□ -1.8
USP48-215ENST00000534705 RAB21Q9UL25 225 aa3.83□□□□□ -1.8
USP48-215ENST00000534705 DAPP1Q9UN19 280 aa3.83□□□□□ -1.8
USP48-215ENST00000534705 LZTS1Q9Y250 596 aa3.83□□□□□ -1.8
USP48-215ENST00000534705 DAAM1Q9Y4D1 1078 aa3.83□□□□□ -1.8
USP48-215ENST00000534705 TNS2Q63HR2 1409 aa3.83□□□□□ -1.8
USP48-215ENST00000534705 SMG6Q86US8 1419 aaKnown RBP3.83□□□□□ -1.8
USP48-215ENST00000534705 CICQ96RK0 1608 aaPredicted RBP3.83□□□□□ -1.8
USP48-215ENST00000534705 CHD4Q14839 1912 aa3.82□□□□□ -1.8
USP48-215ENST00000534705 C4AP0C0L4 1744 aa3.82□□□□□ -1.8
USP48-215ENST00000534705 C4BP0C0L5 1744 aa3.82□□□□□ -1.8
USP48-215ENST00000534705 MEGF6O75095 1541 aa3.82□□□□□ -1.8
USP48-215ENST00000534705 BCL9O00512 1426 aa3.82□□□□□ -1.8
USP48-215ENST00000534705 RTL1A6NKG5 1358 aa3.82□□□□□ -1.8
USP48-215ENST00000534705 KIF7Q2M1P5 1343 aa3.82□□□□□ -1.8
USP48-215ENST00000534705 MAP3K19Q56UN5 1328 aa3.82□□□□□ -1.8
USP48-215ENST00000534705 EME2A4GXA9 379 aaPredicted RBP3.82□□□□□ -1.8
USP48-215ENST00000534705 RHODO00212 210 aa3.82□□□□□ -1.8
USP48-215ENST00000534705 SPTLC2O15270 562 aa3.82□□□□□ -1.8
USP48-215ENST00000534705 HNRNPRO43390 633 aaKnown RBP3.82□□□□□ -1.8
USP48-215ENST00000534705 ATG13O75143 517 aa3.82□□□□□ -1.8
USP48-215ENST00000534705 WDHD1O75717 1129 aaPredicted RBP3.82□□□□□ -1.8
USP48-215ENST00000534705 ALPLP05186 524 aa3.82□□□□□ -1.8
USP48-215ENST00000534705 HSP90AA1P07900 732 aaKnown RBP3.82□□□□□ -1.8
USP48-215ENST00000534705 PSG1P11464 419 aa3.82□□□□□ -1.8
USP48-215ENST00000534705 PCP4P48539 62 aa3.82□□□□□ -1.8
USP48-215ENST00000534705 RCAN1P53805 252 aa3.82□□□□□ -1.8
USP48-215ENST00000534705 SHC2P98077 582 aa3.82□□□□□ -1.8
USP48-215ENST00000534705 C10orf76Q5T2E6 689 aa3.82□□□□□ -1.8
USP48-215ENST00000534705 VWA5B1Q5TIE3 1220 aa3.82□□□□□ -1.8
USP48-215ENST00000534705 ASPHD1Q5U4P2 390 aa3.82□□□□□ -1.8
USP48-215ENST00000534705 CYB5R4Q7L1T6 521 aa3.82□□□□□ -1.8
USP48-215ENST00000534705 PIM3Q86V86 326 aa3.82□□□□□ -1.8
USP48-215ENST00000534705 KCNH5Q8NCM2 988 aa3.82□□□□□ -1.8
USP48-215ENST00000534705 SCAMP5Q8TAC9 235 aa3.82□□□□□ -1.8
USP48-215ENST00000534705 OTUD7AQ8TE49 926 aaPredicted RBP3.82□□□□□ -1.8
USP48-215ENST00000534705 NLRP4Q96MN2 994 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms