RNA–Protein interactions for RNA: ENST00000512431.5

DDX41-215, Transcript of DEAD-box helicase 41, human

TSL 5

Gene DDX41, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX41-215	ENST00000512431	NEMP1	O14524	444 aa		12.82	□□□□□ -0.36
DDX41-215	ENST00000512431	RAD51B	O15315	384 aa		12.82	□□□□□ -0.36
DDX41-215	ENST00000512431	YY2	O15391	372 aa		12.82	□□□□□ -0.36
DDX41-215	ENST00000512431	GCAT	O75600	419 aa		12.82	□□□□□ -0.36
DDX41-215	ENST00000512431	LEFTY1	O75610	366 aa		12.82	□□□□□ -0.36
DDX41-215	ENST00000512431	MT-CO1	P00395	513 aa		12.82	□□□□□ -0.36
DDX41-215	ENST00000512431	IGLV3-25	P01717	112 aa		12.82	□□□□□ -0.36
DDX41-215	ENST00000512431	RHOC	P08134	193 aa		12.82	□□□□□ -0.36
DDX41-215	ENST00000512431	ADRB3	P13945	408 aa		12.82	□□□□□ -0.36
DDX41-215	ENST00000512431	HGF	P14210	728 aa		12.82	□□□□□ -0.36
DDX41-215	ENST00000512431	CDH4	P55283	916 aa		12.82	□□□□□ -0.36
DDX41-215	ENST00000512431	EIF2B5	Q13144	721 aa	Known RBP	12.82	□□□□□ -0.36
DDX41-215	ENST00000512431	MORC3	Q14149	939 aa		12.82	□□□□□ -0.36
DDX41-215	ENST00000512431	FGL2	Q14314	439 aa		12.82	□□□□□ -0.36
DDX41-215	ENST00000512431	ZCWPW2	Q504Y3	356 aa		12.82	□□□□□ -0.36
DDX41-215	ENST00000512431	ATL3	Q6DD88	541 aa		12.82	□□□□□ -0.36
DDX41-215	ENST00000512431	B3GNT8	Q7Z7M8	397 aa		12.82	□□□□□ -0.36
DDX41-215	ENST00000512431	PTRH1	Q86Y79	214 aa	Known RBP	12.82	□□□□□ -0.36
DDX41-215	ENST00000512431	PHACTR4	Q8IZ21	702 aa		12.82	□□□□□ -0.36
DDX41-215	ENST00000512431	RBFA	Q8N0V3	343 aa		12.82	□□□□□ -0.36
DDX41-215	ENST00000512431	PPM1K	Q8N3J5	372 aa		12.82	□□□□□ -0.36
DDX41-215	ENST00000512431	ARL10	Q8N8L6	244 aa		12.82	□□□□□ -0.36
DDX41-215	ENST00000512431	CHST14	Q8NCH0	376 aa		12.82	□□□□□ -0.36
DDX41-215	ENST00000512431	OR52K2	Q8NGK3	314 aa		12.82	□□□□□ -0.36
DDX41-215	ENST00000512431	ZNF564	Q8TBZ8	553 aa	Predicted RBP	12.82	□□□□□ -0.36
DDX41-215	ENST00000512431	NT5C1B	Q96P26	610 aa		12.82	□□□□□ -0.36
DDX41-215	ENST00000512431	FOXP3	Q9BZS1	431 aa		12.82	□□□□□ -0.36
DDX41-215	ENST00000512431	TNKS2	Q9H2K2	1166 aa		12.82	□□□□□ -0.36
DDX41-215	ENST00000512431	THAP9	Q9H5L6	903 aa		12.82	□□□□□ -0.36
DDX41-215	ENST00000512431	DDIT4	Q9NX09	232 aa		12.82	□□□□□ -0.36
DDX41-215	ENST00000512431	COX16	Q9P0S2	106 aa		12.82	□□□□□ -0.36
DDX41-215	ENST00000512431	TBC1D30	Q9Y2I9	924 aa		12.82	□□□□□ -0.36
DDX41-215	ENST00000512431	FADS3	Q9Y5Q0	445 aa		12.82	□□□□□ -0.36
DDX41-215	ENST00000512431	DOCK9	Q9BZ29	2069 aa		12.82	□□□□□ -0.36
DDX41-215	ENST00000512431		A0A1B0GVL5	298 aa		12.81	□□□□□ -0.36
DDX41-215	ENST00000512431		D6RAR5	112 aa		12.81	□□□□□ -0.36
DDX41-215	ENST00000512431		K7ERQ8	282 aa		12.81	□□□□□ -0.36
DDX41-215	ENST00000512431	RNF225	M0QZC1	329 aa	Predicted RBP	12.81	□□□□□ -0.36
DDX41-215	ENST00000512431	CASC3	O15234	703 aa	Known RBP	12.81	□□□□□ -0.36
DDX41-215	ENST00000512431	SPINT1	O43278	529 aa		12.81	□□□□□ -0.36
DDX41-215	ENST00000512431	TSPAN6	O43657	245 aa		12.81	□□□□□ -0.36
DDX41-215	ENST00000512431	AP1G1	O43747	822 aa		12.81	□□□□□ -0.36
DDX41-215	ENST00000512431	RPLP0	P05388	317 aa	Known RBP	12.81	□□□□□ -0.36
DDX41-215	ENST00000512431	ALPI	P09923	528 aa		12.81	□□□□□ -0.36
DDX41-215	ENST00000512431	PFKFB1	P16118	471 aa		12.81	□□□□□ -0.36
DDX41-215	ENST00000512431	RRM1	P23921	792 aa		12.81	□□□□□ -0.36
DDX41-215	ENST00000512431	ITGB7	P26010	798 aa		12.81	□□□□□ -0.36
DDX41-215	ENST00000512431	L1CAM	P32004	1257 aa		12.81	□□□□□ -0.36
DDX41-215	ENST00000512431	CCKBR	P32239	447 aa		12.81	□□□□□ -0.36
DDX41-215	ENST00000512431	GPD2	P43304	727 aa		12.81	□□□□□ -0.36
DDX41-215	ENST00000512431	RPL34	P49207	117 aa	Known RBP	12.81	□□□□□ -0.36
DDX41-215	ENST00000512431	BLK	P51451	505 aa		12.81	□□□□□ -0.36
DDX41-215	ENST00000512431	PFN3	P60673	137 aa		12.81	□□□□□ -0.36
DDX41-215	ENST00000512431	CYP4F2	P78329	520 aa		12.81	□□□□□ -0.36
DDX41-215	ENST00000512431	CCL7	P80098	99 aa		12.81	□□□□□ -0.36
DDX41-215	ENST00000512431	ELOC	Q15369	112 aa		12.81	□□□□□ -0.36
DDX41-215	ENST00000512431	C22orf39	Q6P5X5	142 aa		12.81	□□□□□ -0.36
DDX41-215	ENST00000512431	BORA	Q6PGQ7	559 aa		12.81	□□□□□ -0.36
DDX41-215	ENST00000512431	VASH2	Q86V25	355 aa		12.81	□□□□□ -0.36
DDX41-215	ENST00000512431	SDR16C5	Q8N3Y7	309 aa		12.81	□□□□□ -0.36
DDX41-215	ENST00000512431	DENND6B	Q8NEG7	585 aa		12.81	□□□□□ -0.36
DDX41-215	ENST00000512431	OR6C4	Q8NGE1	309 aa		12.81	□□□□□ -0.36
DDX41-215	ENST00000512431	STK32A	Q8WU08	396 aa		12.81	□□□□□ -0.36
DDX41-215	ENST00000512431	ASB12	Q8WXK4	309 aa		12.81	□□□□□ -0.36
DDX41-215	ENST00000512431	ZSWIM1	Q9BR11	485 aa		12.81	□□□□□ -0.36
DDX41-215	ENST00000512431	C1QTNF2	Q9BXJ5	285 aa		12.81	□□□□□ -0.36
DDX41-215	ENST00000512431	CPEB1	Q9BZB8	566 aa	Known RBP	12.81	□□□□□ -0.36
DDX41-215	ENST00000512431	VPS51	Q9UID3	782 aa		12.81	□□□□□ -0.36
DDX41-215	ENST00000512431	LOXL2	Q9Y4K0	774 aa		12.81	□□□□□ -0.36
DDX41-215	ENST00000512431	COL27A1	Q8IZC6	1860 aa	Predicted RBP	12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	PTPN13	Q12923	2485 aa		12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	PRAMEF33	A0A0G2JMD5	474 aa		12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	IGLON5	A6NGN9	336 aa		12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	SLC16A3	O15427	465 aa	Known RBP	12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	MED7	O43513	233 aa		12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	SMAD6	O43541	496 aa	Known RBP	12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	SNAP91	O60641	907 aa		12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	PRAMEF10	O60809	474 aa		12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	ENDOD1	O94919	500 aa		12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	CTSE	P14091	401 aa		12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	TSHR	P16473	764 aa		12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	CMA1	P23946	247 aa		12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	CD82	P27701	267 aa		12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	DNA2	P51530	1060 aa		12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	YPEL5	P62699	121 aa		12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	PPARD	Q03181	441 aa		12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	CETN1	Q12798	172 aa		12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	EIF4EBP2	Q13542	120 aa	Predicted RBP	12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	CLCA4	Q14CN2	919 aa		12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	TMEM164	Q5U3C3	297 aa		12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	LVRN	Q6Q4G3	990 aa		12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	LINGO4	Q6UY18	593 aa		12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	DPY19L3	Q6ZPD9	716 aa		12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	ZFAND4	Q86XD8	727 aa		12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	FSTL5	Q8N475	847 aa	Predicted RBP	12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	FAM26E	Q8N5C1	309 aa		12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	RAB7B	Q96AH8	199 aa		12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	CCDC74A	Q96AQ1	378 aa		12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	KLF6	Q99612	283 aa	Predicted RBP	12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	CMKLR1	Q99788	373 aa		12.8	□□□□□ -0.36

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