RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 NT5DC4Q86YG4 428 aa7.4□□□□□ -1.23
USP48-206ENST00000464577 CLVS1Q8IUQ0 354 aaPredicted RBP7.4□□□□□ -1.23
USP48-206ENST00000464577 SCUBE3Q8IX30 993 aa7.4□□□□□ -1.23
USP48-206ENST00000464577 COLGALT2Q8IYK4 626 aa7.4□□□□□ -1.23
USP48-206ENST00000464577 MYO1HQ8N1T3 1032 aa7.4□□□□□ -1.23
USP48-206ENST00000464577 LRRC71Q8N4P6 559 aa7.4□□□□□ -1.23
USP48-206ENST00000464577 CHST13Q8NET6 341 aa7.4□□□□□ -1.23
USP48-206ENST00000464577 ZSCAN18Q8TBC5 510 aaPredicted RBP7.4□□□□□ -1.23
USP48-206ENST00000464577 ADAM32Q8TC27 787 aa7.4□□□□□ -1.23
USP48-206ENST00000464577 FAM45AQ8TCE6 357 aa7.4□□□□□ -1.23
USP48-206ENST00000464577 GIPC3Q8TF64 312 aa7.4□□□□□ -1.23
USP48-206ENST00000464577 LPGAT1Q92604 370 aa7.4□□□□□ -1.23
USP48-206ENST00000464577 C12orf43Q96C57 262 aaKnown RBP7.4□□□□□ -1.23
USP48-206ENST00000464577 ATXN7L3BQ96GX2 97 aa7.4□□□□□ -1.23
USP48-206ENST00000464577 COX4I2Q96KJ9 171 aa7.4□□□□□ -1.23
USP48-206ENST00000464577 TCF12Q99081 682 aa7.4□□□□□ -1.23
USP48-206ENST00000464577 AGAP2Q99490 1192 aa7.4□□□□□ -1.23
USP48-206ENST00000464577 SLC29A1Q99808 456 aa7.4□□□□□ -1.23
USP48-206ENST00000464577 SEMA6AQ9H2E6 1030 aa7.4□□□□□ -1.23
USP48-206ENST00000464577 RHOJQ9H4E5 214 aa7.4□□□□□ -1.23
USP48-206ENST00000464577 PALMDQ9NP74 551 aa7.4□□□□□ -1.23
USP48-206ENST00000464577 SPAG4Q9NPE6 437 aa7.4□□□□□ -1.23
USP48-206ENST00000464577 C8orf4Q9NR00 106 aa7.4□□□□□ -1.23
USP48-206ENST00000464577 CACNA2D2Q9NY47 1150 aa7.4□□□□□ -1.23
USP48-206ENST00000464577 TLK1Q9UKI8 766 aa7.4□□□□□ -1.23
USP48-206ENST00000464577 SNX9Q9Y5X1 595 aa7.4□□□□□ -1.23
USP48-206ENST00000464577 RAD54BQ9Y620 910 aa7.4□□□□□ -1.23
USP48-206ENST00000464577 TANC1Q9C0D5 1861 aa7.4□□□□□ -1.23
USP48-206ENST00000464577 COL4A5P29400 1685 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 A0A0G2JMZ2 1700 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 LRRC37A2A6NM11 1700 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 ZSWIM8A7E2V4 1837 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 PLOD2O00469 737 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 AKAP10O43572 662 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 CSPG5O95196 566 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 JUNP05412 331 aaKnown RBP7.39□□□□□ -1.23
USP48-206ENST00000464577 PDGFRBP09619 1106 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 TCN1P20061 433 aaPredicted RBP7.39□□□□□ -1.23
USP48-206ENST00000464577 EDNRBP24530 442 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 DCKP27707 260 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 CCR10P46092 362 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 ATXN1P54253 815 aaKnown RBP7.39□□□□□ -1.23
USP48-206ENST00000464577 NAGLUP54802 743 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 NME5P56597 212 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 DNAJB13P59910 316 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 SLC12A1Q13621 1099 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 GRM3Q14832 879 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 SMAD1Q15797 465 aaKnown RBP7.39□□□□□ -1.23
USP48-206ENST00000464577 HSDL1Q3SXM5 330 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 C6orf10Q5SRN2 563 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 KCTD11Q693B1 232 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 REP15Q6BDI9 236 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 LRRC8EQ6NSJ5 796 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 GK5Q6ZS86 529 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 ZBTB49Q6ZSB9 765 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 PLPPR4Q7Z2D5 763 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 PIWIL4Q7Z3Z4 852 aaKnown RBP7.39□□□□□ -1.23
USP48-206ENST00000464577 ZC3HC1Q86WB0 502 aaKnown RBP7.39□□□□□ -1.23
USP48-206ENST00000464577 CDR2LQ86X02 465 aaPredicted RBP7.39□□□□□ -1.23
USP48-206ENST00000464577 TRIM50Q86XT4 487 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 TMEM130Q8N3G9 435 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 C12orf29Q8N999 325 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 FAM47BQ8NA70 645 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 GOLM1Q8NBJ4 401 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 FAM156AQ8NDB6 213 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 GRIN3AQ8TCU5 1115 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 RNF139Q8WU17 664 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 MARK4Q96L34 752 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 PPP1R36Q96LQ0 422 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 MAGEB5Q9BZ81 275 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP7.39□□□□□ -1.23
USP48-206ENST00000464577 TMEM181Q9P2C4 612 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 EBF1Q9UH73 591 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 ITGB1BP2Q9UKP3 347 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 SLC39A10Q9ULF5 831 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 HES2Q9Y543 173 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 SNX13Q9Y5W8 968 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 BOLA2-SMG1P6H3BVE0 249 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 AP3B1O00203 1094 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 PSMD12O00232 456 aaPredicted RBP7.39□□□□□ -1.23
USP48-206ENST00000464577 DLX3O60479 287 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 SUPT3HO75486 399 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 SRP72O76094 671 aaKnown RBP7.39□□□□□ -1.23
USP48-206ENST00000464577 BAIAP3O94812 1187 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 STAMBPO95630 424 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 INHBBP09529 407 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 SLC35E2BP0CK96 405 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 TGFB3P10600 412 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 HSPA8P11142 646 aaKnown RBP7.39□□□□□ -1.23
USP48-206ENST00000464577 FGFR3P22607 806 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 DNAJB2P25686 324 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 PTPN3P26045 913 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 ACADSBP45954 432 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 ATP4BP51164 291 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 NAA20P61599 178 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 PRKCQQ04759 706 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 POU5F1BQ06416 359 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 FSTL1Q12841 308 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 ZBTB17Q13105 803 aa7.39□□□□□ -1.23
USP48-206ENST00000464577 DGKDQ16760 1214 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms