RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 BCL10O95999 233 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 USP17L7P0C7H9 530 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 ERCC2P18074 760 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 ATF4P18848 351 aaPredicted RBP12.1□□□□□ -0.47
HMGB1-206ENST00000405805 NFKB1P19838 968 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 IFNA8P32881 189 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 CXCR3P49682 368 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 SLC5A3P53794 718 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 ERO1BQ86YB8 467 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 ENDOVQ8N8Q3 282 aaKnown RBP12.1□□□□□ -0.47
HMGB1-206ENST00000405805 DCUN1D1Q96GG9 259 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 SEPHS2Q99611 448 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 CIB1Q99828 191 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 SIX4Q9UIU6 781 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 TMED5Q9Y3A6 229 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 FAM149AA5PLN7 773 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 A6NHS1 94 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 TNPO2O14787 897 aaKnown RBP12.1□□□□□ -0.47
HMGB1-206ENST00000405805 ZBTB11O95625 1053 aaPredicted RBP12.1□□□□□ -0.47
HMGB1-206ENST00000405805 LTFP02788 710 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 ASLP04424 464 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 MYL3P08590 195 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 BCAT1P54687 386 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 MRPS5P82675 430 aaKnown RBP12.1□□□□□ -0.47
HMGB1-206ENST00000405805 GSTA3Q16772 222 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 SLC10A6Q3KNW5 377 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 FBXO47Q5MNV8 452 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 SCIMPQ6UWF3 145 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 TFAP2DQ7Z6R9 452 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 SPNS2Q8IVW8 549 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 PLD6Q8N2A8 252 aaKnown RBP12.1□□□□□ -0.47
HMGB1-206ENST00000405805 JADE3Q92613 823 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 SPON2Q9BUD6 331 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 XPR1Q9UBH6 696 aa12.1□□□□□ -0.47
HMGB1-206ENST00000405805 MAFBQ9Y5Q3 323 aaPredicted RBP12.1□□□□□ -0.47
HMGB1-206ENST00000405805 GABBR2O75899 941 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 PARNO95453 639 aaKnown RBP12.09□□□□□ -0.47
HMGB1-206ENST00000405805 CYP2C9P11712 490 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 ADCYAP1R1P41586 468 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 TPTEP56180 551 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 KCNJ11Q14654 390 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 PAOXQ6QHF9 649 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 LDB1Q86U70 411 aaPredicted RBP12.09□□□□□ -0.47
HMGB1-206ENST00000405805 ADGRF2Q8IZF7 708 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 ATPAF2Q8N5M1 289 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 CDC26Q8NHZ8 85 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 SKA2Q8WVK7 121 aaPredicted RBP12.09□□□□□ -0.47
HMGB1-206ENST00000405805 KCTD15Q96SI1 283 aaPredicted RBP12.09□□□□□ -0.47
HMGB1-206ENST00000405805 RNF38Q9H0F5 515 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 LHX5Q9H2C1 402 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 TRPV5Q9NQA5 729 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 SEPT3Q9UH03 358 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 PCDHGC3Q9UN70 934 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 GNEQ9Y223 722 aaKnown RBP12.09□□□□□ -0.47
HMGB1-206ENST00000405805 CRYL1Q9Y2S2 319 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 SOWAHBA6NEL2 793 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 ANGPT2O15123 496 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 IDH3BO43837 385 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 RECQL4O94761 1208 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 XRCC1P18887 633 aaPredicted RBP12.09□□□□□ -0.47
HMGB1-206ENST00000405805 PTPN7P35236 360 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 PITX1P78337 314 aaPredicted RBP12.09□□□□□ -0.47
HMGB1-206ENST00000405805 BST2Q10589 180 aaKnown RBP12.09□□□□□ -0.47
HMGB1-206ENST00000405805 IQSEC1Q6DN90 963 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 DSELQ8IZU8 1212 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 FBXW8Q8N3Y1 598 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 SPATA22Q8NHS9 363 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 ZC3H15Q8WU90 426 aaKnown RBP12.09□□□□□ -0.47
HMGB1-206ENST00000405805 DHRS1Q96LJ7 313 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 ULBP1Q9BZM6 244 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 AP4S1Q9Y587 144 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 M0QZ92 97 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 BNIP3LO60238 219 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 GSTT2P0CG29 244 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 GSTT2BP0CG30 244 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 NR4A1P22736 598 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 JAK1P23458 1154 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 SOWAHAQ2M3V2 549 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 C6orf10Q5SRN2 563 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 TEDDM1Q5T9Z0 273 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 C9orf131Q5VYM1 1079 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 FSTL4Q6MZW2 842 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 OTOP3Q7RTS5 596 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 TTC30AQ86WT1 665 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 TUBGCP3Q96CW5 907 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 NXF3Q9H4D5 531 aaKnown RBP12.09□□□□□ -0.47
HMGB1-206ENST00000405805 ADAMTS6Q9UKP5 1117 aa12.09□□□□□ -0.47
HMGB1-206ENST00000405805 HTR3EA5X5Y0 456 aa12.08□□□□□ -0.47
HMGB1-206ENST00000405805 PSMD11O00231 422 aa12.08□□□□□ -0.47
HMGB1-206ENST00000405805 YBX3P16989 372 aaKnown RBP eCLIP12.08□□□□□ -0.476e-17■■□□□ 12.5
HMGB1-206ENST00000405805 RPL14P50914 215 aaKnown RBP12.08□□□□□ -0.47
HMGB1-206ENST00000405805 SLC18A2Q05940 514 aa12.08□□□□□ -0.47
HMGB1-206ENST00000405805 MTX3Q5HYI7 312 aa12.08□□□□□ -0.47
HMGB1-206ENST00000405805 LBX2Q6XYB7 198 aa12.08□□□□□ -0.47
HMGB1-206ENST00000405805 ARCQ7LC44 396 aa12.08□□□□□ -0.47
HMGB1-206ENST00000405805 RAB44Q7Z6P3 723 aaPredicted RBP12.08□□□□□ -0.47
HMGB1-206ENST00000405805 RELL1Q8IUW5 271 aa12.08□□□□□ -0.47
HMGB1-206ENST00000405805 GPC2Q8N158 579 aa12.08□□□□□ -0.47
HMGB1-206ENST00000405805 PQLC3Q8N755 202 aa12.08□□□□□ -0.47
HMGB1-206ENST00000405805 LRRC39Q96DD0 335 aa12.08□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms