RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 PGK1P00558 417 aa16.61■□□□□ 0.25
SDC4-201ENST00000372733 HDCP19113 662 aa16.61■□□□□ 0.25
SDC4-201ENST00000372733 ADSLP30566 484 aaPredicted RBP16.61■□□□□ 0.25
SDC4-201ENST00000372733 HK2P52789 917 aa16.61■□□□□ 0.25
SDC4-201ENST00000372733 PSME3P61289 254 aa16.61■□□□□ 0.25
SDC4-201ENST00000372733 ARHGAP1Q07960 439 aa16.61■□□□□ 0.25
SDC4-201ENST00000372733 FAM219BQ5XKK7 198 aa16.61■□□□□ 0.25
SDC4-201ENST00000372733 CRYBG2Q8N1P7 616 aa16.61■□□□□ 0.25
SDC4-201ENST00000372733 SNX31Q8N9S9 440 aa16.61■□□□□ 0.25
SDC4-201ENST00000372733 GRIN3AQ8TCU5 1115 aa16.61■□□□□ 0.25
SDC4-201ENST00000372733 GAB3Q8WWW8 586 aa16.61■□□□□ 0.25
SDC4-201ENST00000372733 TMIGD2Q96BF3 282 aa16.61■□□□□ 0.25
SDC4-201ENST00000372733 EPS15L1Q9UBC2 864 aa16.61■□□□□ 0.25
SDC4-201ENST00000372733 PCDHGA7Q9Y5G6 932 aa16.61■□□□□ 0.25
SDC4-201ENST00000372733 PAPPA2Q9BXP8 1791 aa16.61■□□□□ 0.25
SDC4-201ENST00000372733 TARM1B6A8C7 271 aa16.61■□□□□ 0.25
SDC4-201ENST00000372733 E7ENX8 843 aa16.61■□□□□ 0.25
SDC4-201ENST00000372733 XPO1O14980 1071 aaKnown RBP16.61■□□□□ 0.25
SDC4-201ENST00000372733 TRMUO75648 421 aaKnown RBP16.61■□□□□ 0.25
SDC4-201ENST00000372733 TPI1P60174 286 aa16.61■□□□□ 0.25
SDC4-201ENST00000372733 MPP1Q00013 466 aa16.61■□□□□ 0.25
SDC4-201ENST00000372733 PPIDQ08752 370 aaKnown RBP16.61■□□□□ 0.25
SDC4-201ENST00000372733 TTLL4Q14679 1199 aa16.61■□□□□ 0.25
SDC4-201ENST00000372733 ZBTB6Q15916 424 aa16.61■□□□□ 0.25
SDC4-201ENST00000372733 KLC3Q6P597 504 aa16.61■□□□□ 0.25
SDC4-201ENST00000372733 BORAQ6PGQ7 559 aa16.61■□□□□ 0.25
SDC4-201ENST00000372733 SULF1Q8IWU6 871 aa16.61■□□□□ 0.25
SDC4-201ENST00000372733 TSPAN14Q8NG11 270 aa16.61■□□□□ 0.25
SDC4-201ENST00000372733 CCT7Q99832 543 aa16.61■□□□□ 0.25
SDC4-201ENST00000372733 NXF3Q9H4D5 531 aaKnown RBP16.61■□□□□ 0.25
SDC4-201ENST00000372733 LIN28AQ9H9Z2 209 aaKnown RBP16.61■□□□□ 0.25
SDC4-201ENST00000372733 GTSE1Q9NYZ3 720 aa16.61■□□□□ 0.25
SDC4-201ENST00000372733 SNX10Q9Y5X0 201 aa16.61■□□□□ 0.25
SDC4-201ENST00000372733 ARHGEF37A1IGU5 675 aa16.6■□□□□ 0.25
SDC4-201ENST00000372733 SLCO1B7G3V0H7 640 aa16.6■□□□□ 0.25
SDC4-201ENST00000372733 USP2O75604 605 aaPredicted RBP16.6■□□□□ 0.25
SDC4-201ENST00000372733 NOS2P35228 1153 aa16.6■□□□□ 0.25
SDC4-201ENST00000372733 SCNN1BP51168 640 aa16.6■□□□□ 0.25
SDC4-201ENST00000372733 GALK1P51570 392 aa16.6■□□□□ 0.25
SDC4-201ENST00000372733 PDAP1Q13442 181 aaKnown RBP16.6■□□□□ 0.25
SDC4-201ENST00000372733 MTX3Q5HYI7 312 aa16.6■□□□□ 0.25
SDC4-201ENST00000372733 FBXO47Q5MNV8 452 aa16.6■□□□□ 0.25
SDC4-201ENST00000372733 CEP97Q8IW35 865 aa16.6■□□□□ 0.25
SDC4-201ENST00000372733 MFSD6LQ8IWD5 586 aa16.6■□□□□ 0.25
SDC4-201ENST00000372733 DENND6AQ8IWF6 608 aa16.6■□□□□ 0.25
SDC4-201ENST00000372733 NUP93Q8N1F7 819 aa16.6■□□□□ 0.25
SDC4-201ENST00000372733 HMGCLL1Q8TB92 370 aa16.6■□□□□ 0.25
SDC4-201ENST00000372733 WNT8BQ93098 351 aa16.6■□□□□ 0.25
SDC4-201ENST00000372733 NT5C3BQ969T7 300 aa16.6■□□□□ 0.25
SDC4-201ENST00000372733 NXNL1Q96CM4 212 aa16.6■□□□□ 0.25
SDC4-201ENST00000372733 ASB9Q96DX5 294 aa16.6■□□□□ 0.25
SDC4-201ENST00000372733 TRPV6Q9H1D0 765 aa16.6■□□□□ 0.25
SDC4-201ENST00000372733 GOLGA2P5Q9HBQ8 144 aa16.6■□□□□ 0.25
SDC4-201ENST00000372733 AP4S1Q9Y587 144 aa16.6■□□□□ 0.25
SDC4-201ENST00000372733 HEMK1Q9Y5R4 338 aaPredicted RBP16.6■□□□□ 0.25
SDC4-201ENST00000372733 NEMP2A6NFY4 417 aa16.6■□□□□ 0.25
SDC4-201ENST00000372733 PFDN1O60925 122 aa16.6■□□□□ 0.25
SDC4-201ENST00000372733 HNRNPLP14866 589 aaKnown RBP eCLIP16.6■□□□□ 0.25
SDC4-201ENST00000372733 CLCN2P51788 898 aa16.6■□□□□ 0.25
SDC4-201ENST00000372733 SLC12A1Q13621 1099 aa16.6■□□□□ 0.25
SDC4-201ENST00000372733 IKBKEQ14164 716 aa16.6■□□□□ 0.25
SDC4-201ENST00000372733 KCTD2Q14681 263 aa16.6■□□□□ 0.25
SDC4-201ENST00000372733 BNIPLQ7Z465 357 aa16.6■□□□□ 0.25
SDC4-201ENST00000372733 TXNDC5Q8NBS9 432 aaKnown RBP16.6■□□□□ 0.25
SDC4-201ENST00000372733 TIMMDC1Q9NPL8 285 aa16.6■□□□□ 0.25
SDC4-201ENST00000372733 STAP1Q9ULZ2 295 aa16.6■□□□□ 0.25
SDC4-201ENST00000372733 PADI4Q9UM07 663 aa16.6■□□□□ 0.25
SDC4-201ENST00000372733 DNAJC25-GNG10A0A024R161 153 aa16.59■□□□□ 0.25
SDC4-201ENST00000372733 RECQL4O94761 1208 aa16.59■□□□□ 0.25
SDC4-201ENST00000372733 AHSGP02765 367 aa16.59■□□□□ 0.25
SDC4-201ENST00000372733 AKAP5P24588 427 aa16.59■□□□□ 0.25
SDC4-201ENST00000372733 HOXA11P31270 313 aaPredicted RBP16.59■□□□□ 0.25
SDC4-201ENST00000372733 PRKAA2P54646 552 aa16.59■□□□□ 0.25
SDC4-201ENST00000372733 EMP3P54852 163 aa16.59■□□□□ 0.25
SDC4-201ENST00000372733 CTBP1Q13363 440 aa16.59■□□□□ 0.25
SDC4-201ENST00000372733 DCAF4L1Q3SXM0 396 aa16.59■□□□□ 0.25
SDC4-201ENST00000372733 DALRD3Q5D0E6 543 aaKnown RBP16.59■□□□□ 0.25
SDC4-201ENST00000372733 CYP2R1Q6VVX0 501 aa16.59■□□□□ 0.25
SDC4-201ENST00000372733 MYO1HQ8N1T3 1032 aa16.59■□□□□ 0.25
SDC4-201ENST00000372733 ZNF597Q96LX8 424 aa16.59■□□□□ 0.25
SDC4-201ENST00000372733 TRPC7Q9HCX4 862 aa16.59■□□□□ 0.25
SDC4-201ENST00000372733 DERAQ9Y315 318 aa16.59■□□□□ 0.25
SDC4-201ENST00000372733 C8BP07358 591 aa16.59■□□□□ 0.25
SDC4-201ENST00000372733 ADRA1BP35368 520 aa16.59■□□□□ 0.25
SDC4-201ENST00000372733 NPY2RP49146 381 aa16.59■□□□□ 0.25
SDC4-201ENST00000372733 ZNF772Q68DY9 489 aaPredicted RBP16.59■□□□□ 0.25
SDC4-201ENST00000372733 CNSTQ6PJW8 725 aa16.59■□□□□ 0.25
SDC4-201ENST00000372733 CTU1Q7Z7A3 348 aaKnown RBP16.59■□□□□ 0.25
SDC4-201ENST00000372733 OSTM1Q86WC4 334 aa16.59■□□□□ 0.25
SDC4-201ENST00000372733 USP33Q8TEY7 942 aa16.59■□□□□ 0.25
SDC4-201ENST00000372733 GPR78Q96P69 363 aa16.59■□□□□ 0.25
SDC4-201ENST00000372733 SLC29A1Q99808 456 aa16.59■□□□□ 0.25
SDC4-201ENST00000372733 OSBPL2Q9H1P3 480 aa16.59■□□□□ 0.25
SDC4-201ENST00000372733 CAAP1Q9H8G2 361 aa16.59■□□□□ 0.25
SDC4-201ENST00000372733 PLEKHA5Q9HAU0 1116 aa16.59■□□□□ 0.25
SDC4-201ENST00000372733 DNAAF2Q9NVR5 837 aaKnown RBP16.59■□□□□ 0.25
SDC4-201ENST00000372733 KLK14Q9P0G3 267 aa16.59■□□□□ 0.25
SDC4-201ENST00000372733 SUCOQ9UBS9 1254 aaKnown RBP16.59■□□□□ 0.25
SDC4-201ENST00000372733 SNX13Q9Y5W8 968 aa16.59■□□□□ 0.25
SDC4-201ENST00000372733 SHROOM3Q8TF72 1996 aa16.58■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms