RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 SEPT6Q14141 434 aa20.35■□□□□ 0.85
VPS53-201ENST00000291074 CNGA3Q16281 694 aa20.35■□□□□ 0.85
VPS53-201ENST00000291074 PHTF2Q8N3S3 785 aa20.35■□□□□ 0.85
VPS53-201ENST00000291074 TMEM151AQ8N4L1 468 aa20.35■□□□□ 0.85
VPS53-201ENST00000291074 LZTR1Q8N653 840 aa20.35■□□□□ 0.85
VPS53-201ENST00000291074 STMN2Q93045 179 aa20.35■□□□□ 0.85
VPS53-201ENST00000291074 MRGPRX2Q96LB1 330 aa20.35■□□□□ 0.85
VPS53-201ENST00000291074 CDH19Q9H159 772 aa20.35■□□□□ 0.85
VPS53-201ENST00000291074 TLK1Q9UKI8 766 aa20.35■□□□□ 0.85
VPS53-201ENST00000291074 WASF2Q9Y6W5 498 aa20.35■□□□□ 0.85
VPS53-201ENST00000291074 TMEM88BA6NKF7 163 aa20.35■□□□□ 0.85
VPS53-201ENST00000291074 AP3B1O00203 1094 aa20.35■□□□□ 0.85
VPS53-201ENST00000291074 ARCN1P48444 511 aaKnown RBP20.35■□□□□ 0.85
VPS53-201ENST00000291074 GEMP55040 296 aa20.35■□□□□ 0.85
VPS53-201ENST00000291074 CEP97Q8IW35 865 aa20.35■□□□□ 0.85
VPS53-201ENST00000291074 PPHLN1Q8NEY8 458 aaKnown RBP20.35■□□□□ 0.85
VPS53-201ENST00000291074 NAF1Q96HR8 494 aaKnown RBP20.35■□□□□ 0.85
VPS53-201ENST00000291074 PANX3Q96QZ0 392 aa20.35■□□□□ 0.85
VPS53-201ENST00000291074 TRPV6Q9H1D0 765 aa20.35■□□□□ 0.85
VPS53-201ENST00000291074 IPO11Q9UI26 975 aaKnown RBP20.35■□□□□ 0.85
VPS53-201ENST00000291074 TCAF1Q9Y4C2 921 aa20.35■□□□□ 0.85
VPS53-201ENST00000291074 LRRC42Q9Y546 428 aa20.35■□□□□ 0.85
VPS53-201ENST00000291074 E9PBE3 544 aa20.34■□□□□ 0.85
VPS53-201ENST00000291074 KLHL41O60662 606 aa20.34■□□□□ 0.85
VPS53-201ENST00000291074 SOAT2O75908 522 aa20.34■□□□□ 0.85
VPS53-201ENST00000291074 NEBLO76041 1014 aa20.34■□□□□ 0.85
VPS53-201ENST00000291074 SKIP12755 728 aa20.34■□□□□ 0.85
VPS53-201ENST00000291074 MPSTP25325 297 aa20.34■□□□□ 0.85
VPS53-201ENST00000291074 DNAL1Q4LDG9 190 aa20.34■□□□□ 0.85
VPS53-201ENST00000291074 FAM26DQ5JW98 314 aa20.34■□□□□ 0.85
VPS53-201ENST00000291074 AFMIDQ63HM1 303 aa20.34■□□□□ 0.85
VPS53-201ENST00000291074 RIPOR1Q6ZS17 1223 aa20.34■□□□□ 0.85
VPS53-201ENST00000291074 CENPLQ8N0S6 344 aaPredicted RBP20.34■□□□□ 0.85
VPS53-201ENST00000291074 SLC25A41Q8N5S1 370 aa20.34■□□□□ 0.85
VPS53-201ENST00000291074 SCYL1Q96KG9 808 aa20.34■□□□□ 0.85
VPS53-201ENST00000291074 B3GALT6Q96L58 329 aa20.34■□□□□ 0.85
VPS53-201ENST00000291074 PPP1R36Q96LQ0 422 aa20.34■□□□□ 0.85
VPS53-201ENST00000291074 SERPINB11Q96P15 392 aa20.34■□□□□ 0.85
VPS53-201ENST00000291074 FAM167BQ9BTA0 163 aa20.34■□□□□ 0.85
VPS53-201ENST00000291074 ZCWPW1Q9H0M4 648 aa20.34■□□□□ 0.85
VPS53-201ENST00000291074 OXSMQ9NWU1 459 aa20.34■□□□□ 0.85
VPS53-201ENST00000291074 GMIPQ9P107 970 aa20.34■□□□□ 0.85
VPS53-201ENST00000291074 SORCS3Q9UPU3 1222 aa20.34■□□□□ 0.85
VPS53-201ENST00000291074 SLC1A2P43004 574 aa20.34■□□□□ 0.85
VPS53-201ENST00000291074 PLXNA3P51805 1871 aa20.34■□□□□ 0.85
VPS53-201ENST00000291074 MAXP61244 160 aa20.34■□□□□ 0.85
VPS53-201ENST00000291074 PNPLA1Q8N8W4 532 aa20.34■□□□□ 0.85
VPS53-201ENST00000291074 TDRD5Q8NAT2 981 aaKnown RBP20.34■□□□□ 0.85
VPS53-201ENST00000291074 NMRK1Q9NWW6 199 aa20.34■□□□□ 0.85
VPS53-201ENST00000291074 STOML1Q9UBI4 398 aa20.34■□□□□ 0.85
VPS53-201ENST00000291074 RUVBL2Q9Y230 463 aaKnown RBP20.34■□□□□ 0.85
VPS53-201ENST00000291074 THSD7BQ9C0I4 1608 aa20.34■□□□□ 0.85
VPS53-201ENST00000291074 AURKAO14965 403 aa20.33■□□□□ 0.85
VPS53-201ENST00000291074 KLHL2O95198 593 aa20.33■□□□□ 0.85
VPS53-201ENST00000291074 TBX18O95935 607 aa20.33■□□□□ 0.85
VPS53-201ENST00000291074 CKBP12277 381 aa20.33■□□□□ 0.85
VPS53-201ENST00000291074 MLLT6P55198 1093 aaPredicted RBP20.33■□□□□ 0.85
VPS53-201ENST00000291074 DSC1Q08554 894 aa20.33■□□□□ 0.85
VPS53-201ENST00000291074 RALGPS1Q5JS13 557 aa20.33■□□□□ 0.85
VPS53-201ENST00000291074 CFAP157Q5JU67 520 aa20.33■□□□□ 0.85
VPS53-201ENST00000291074 KLHL5Q96PQ7 755 aa20.33■□□□□ 0.85
VPS53-201ENST00000291074 NSMCE4AQ9NXX6 385 aa20.33■□□□□ 0.85
VPS53-201ENST00000291074 CDY1Q9Y6F8 540 aa20.33■□□□□ 0.85
VPS53-201ENST00000291074 TTC24A2A3L6 582 aaPredicted RBP20.33■□□□□ 0.84
VPS53-201ENST00000291074 J3KR12 359 aa20.33■□□□□ 0.84
VPS53-201ENST00000291074 DCXO43602 365 aa20.33■□□□□ 0.84
VPS53-201ENST00000291074 ZBTB14O43829 449 aa20.33■□□□□ 0.84
VPS53-201ENST00000291074 ZMPSTE24O75844 475 aa20.33■□□□□ 0.84
VPS53-201ENST00000291074 CNTN5O94779 1100 aa20.33■□□□□ 0.84
VPS53-201ENST00000291074 DNAJB2P25686 324 aa20.33■□□□□ 0.84
VPS53-201ENST00000291074 SNX30Q5VWJ9 437 aa20.33■□□□□ 0.84
VPS53-201ENST00000291074 OR52B2Q96RD2 323 aa20.33■□□□□ 0.84
VPS53-201ENST00000291074 RGS18Q9NS28 235 aa20.33■□□□□ 0.84
VPS53-201ENST00000291074 TBC1D13Q9NVG8 400 aa20.33■□□□□ 0.84
VPS53-201ENST00000291074 GOLGA8QA0A0J9YX86 632 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 LOC100653049A0A140TA62 436 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 FAM95CA0A1B0GW59 222 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 ARHGEF37A1IGU5 675 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 GOLGA8OA6NCC3 632 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 GOLGA8NF8WBI6 632 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 KRT34O76011 436 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 CD1EP15812 388 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 ABL2P42684 1182 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 EFEMP1Q12805 493 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 PSMD5Q16401 504 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 ALFQ53S48 1182 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 ZNF470Q6ECI4 717 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 ZNF280DQ6N043 979 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 TIGD7Q6NT04 549 aaPredicted RBP20.32■□□□□ 0.84
VPS53-201ENST00000291074 EPGNQ6UW88 154 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 ZYG11AQ6WRX3 759 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 CNTN4Q8IWV2 1026 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 COLGALT2Q8IYK4 626 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 NUP93Q8N1F7 819 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 FSTL5Q8N475 847 aaPredicted RBP20.32■□□□□ 0.84
VPS53-201ENST00000291074 ATAD1Q8NBU5 361 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 SUFUQ9UMX1 484 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 A0A088AWK7 358 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 TMEM114B3SHH9 223 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 INPPL1O15357 1258 aa20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms