RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 RNF135Q8IUD6 432 aa25.56■■□□□ 1.68
SHMT1-207ENST00000580002 SFTPA1Q8IWL2 248 aa25.56■■□□□ 1.68
SHMT1-207ENST00000580002 TSEN2Q8NCE0 465 aaKnown RBP25.56■■□□□ 1.68
SHMT1-207ENST00000580002 AENQ8WTP8 325 aaKnown RBP25.56■■□□□ 1.68
SHMT1-207ENST00000580002 RUBCNQ92622 972 aa25.56■■□□□ 1.68
SHMT1-207ENST00000580002 HLA-CQ95604 372 aa25.56■■□□□ 1.68
SHMT1-207ENST00000580002 CHFRQ96EP1 664 aa25.56■■□□□ 1.68
SHMT1-207ENST00000580002 NSMCE3Q96MG7 304 aa25.56■■□□□ 1.68
SHMT1-207ENST00000580002 MLPHQ9BV36 600 aaPredicted RBP25.56■■□□□ 1.68
SHMT1-207ENST00000580002 RSPH14Q9UHP6 348 aa25.56■■□□□ 1.68
SHMT1-207ENST00000580002 ANHXE9PGG2 379 aa25.56■■□□□ 1.68
SHMT1-207ENST00000580002 ECI2O75521 394 aa25.56■■□□□ 1.68
SHMT1-207ENST00000580002 RGRP47804 291 aa25.56■■□□□ 1.68
SHMT1-207ENST00000580002 NIPAL4Q0D2K0 466 aa25.56■■□□□ 1.68
SHMT1-207ENST00000580002 PARP6Q2NL67 630 aa25.56■■□□□ 1.68
SHMT1-207ENST00000580002 YAF2Q8IY57 180 aa25.56■■□□□ 1.68
SHMT1-207ENST00000580002 OXNAD1Q96HP4 312 aaPredicted RBP25.56■■□□□ 1.68
SHMT1-207ENST00000580002 RPL10LQ96L21 214 aaKnown RBP25.56■■□□□ 1.68
SHMT1-207ENST00000580002 FERMT1Q9BQL6 677 aa25.56■■□□□ 1.68
SHMT1-207ENST00000580002 GLOD4Q9HC38 313 aa25.56■■□□□ 1.68
SHMT1-207ENST00000580002 IGSF9Q9P2J2 1179 aa25.56■■□□□ 1.68
SHMT1-207ENST00000580002 UBA2Q9UBT2 640 aaPredicted RBP25.56■■□□□ 1.68
SHMT1-207ENST00000580002 GGA2Q9UJY4 613 aa25.56■■□□□ 1.68
SHMT1-207ENST00000580002 FBXO10Q9UK96 956 aa25.56■■□□□ 1.68
SHMT1-207ENST00000580002 ATP8A1Q9Y2Q0 1164 aa25.56■■□□□ 1.68
SHMT1-207ENST00000580002 ANTXRLA6NF34 631 aa25.55■■□□□ 1.68
SHMT1-207ENST00000580002 HOXC11O43248 304 aaPredicted RBP25.55■■□□□ 1.68
SHMT1-207ENST00000580002 SMAD6O43541 496 aaKnown RBP25.55■■□□□ 1.68
SHMT1-207ENST00000580002 BANF1O75531 89 aa25.55■■□□□ 1.68
SHMT1-207ENST00000580002 MT-CYBP00156 380 aaPredicted RBP25.55■■□□□ 1.68
SHMT1-207ENST00000580002 APRTP07741 180 aa25.55■■□□□ 1.68
SHMT1-207ENST00000580002 MMP13P45452 471 aa25.55■■□□□ 1.68
SHMT1-207ENST00000580002 STK19P49842 368 aaPredicted RBP25.55■■□□□ 1.68
SHMT1-207ENST00000580002 TFF2Q03403 129 aa25.55■■□□□ 1.68
SHMT1-207ENST00000580002 UBAP2Q5T6F2 1119 aaKnown RBP25.55■■□□□ 1.68
SHMT1-207ENST00000580002 TMCO4Q5TGY1 634 aa25.55■■□□□ 1.68
SHMT1-207ENST00000580002 CCDC117Q8IWD4 279 aaPredicted RBP25.55■■□□□ 1.68
SHMT1-207ENST00000580002 PPIL6Q8IXY8 311 aa25.55■■□□□ 1.68
SHMT1-207ENST00000580002 PDCD7Q8N8D1 485 aaKnown RBP25.55■■□□□ 1.68
SHMT1-207ENST00000580002 KIAA1958Q8N8K9 716 aa25.55■■□□□ 1.68
SHMT1-207ENST00000580002 SORCS1Q8WY21 1168 aa25.55■■□□□ 1.68
SHMT1-207ENST00000580002 ATP2A3Q93084 1043 aa25.55■■□□□ 1.68
SHMT1-207ENST00000580002 E2F7Q96AV8 911 aa25.55■■□□□ 1.68
SHMT1-207ENST00000580002 GBA3Q9H227 469 aa25.55■■□□□ 1.68
SHMT1-207ENST00000580002 LIMD1Q9UGP4 676 aa25.55■■□□□ 1.68
SHMT1-207ENST00000580002 TRHDEQ9UKU6 1024 aa25.55■■□□□ 1.68
SHMT1-207ENST00000580002 HPCAL4Q9UM19 191 aa25.55■■□□□ 1.68
SHMT1-207ENST00000580002 FCF1Q9Y324 198 aaKnown RBP25.55■■□□□ 1.68
SHMT1-207ENST00000580002 CACNG3O60359 315 aa25.54■■□□□ 1.68
SHMT1-207ENST00000580002 TULP3O75386 442 aa25.54■■□□□ 1.68
SHMT1-207ENST00000580002 NFATC1O95644 943 aa25.54■■□□□ 1.68
SHMT1-207ENST00000580002 ADH1CP00326 375 aa25.54■■□□□ 1.68
SHMT1-207ENST00000580002 PABPC1P11940 636 aaKnown RBP25.54■■□□□ 1.68
SHMT1-207ENST00000580002 RENBPP51606 427 aa25.54■■□□□ 1.68
SHMT1-207ENST00000580002 DSC2Q02487 901 aa25.54■■□□□ 1.68
SHMT1-207ENST00000580002 RUNX3Q13761 415 aa25.54■■□□□ 1.68
SHMT1-207ENST00000580002 BRD3Q15059 726 aa25.54■■□□□ 1.68
SHMT1-207ENST00000580002 PDGFRLQ15198 375 aa25.54■■□□□ 1.68
SHMT1-207ENST00000580002 AAK1Q2M2I8 961 aa25.54■■□□□ 1.68
SHMT1-207ENST00000580002 ADIPOR2Q86V24 386 aa25.54■■□□□ 1.68
SHMT1-207ENST00000580002 ETFBKMTQ8IXQ9 262 aa25.54■■□□□ 1.68
SHMT1-207ENST00000580002 DCAF4L2Q8NA75 395 aa25.54■■□□□ 1.68
SHMT1-207ENST00000580002 FATE1Q969F0 183 aa25.54■■□□□ 1.68
SHMT1-207ENST00000580002 EXOC2Q96KP1 924 aa25.54■■□□□ 1.68
SHMT1-207ENST00000580002 VAT1Q99536 393 aa25.54■■□□□ 1.68
SHMT1-207ENST00000580002 TRMT61BQ9BVS5 477 aaKnown RBP25.54■■□□□ 1.68
SHMT1-207ENST00000580002 PIH1D1Q9NWS0 290 aaKnown RBP25.54■■□□□ 1.68
SHMT1-207ENST00000580002 ARNTLO00327 626 aa25.54■■□□□ 1.68
SHMT1-207ENST00000580002 DYNC1I1O14576 645 aa25.54■■□□□ 1.68
SHMT1-207ENST00000580002 PLK1P53350 603 aa25.54■■□□□ 1.68
SHMT1-207ENST00000580002 ITKQ08881 620 aa25.54■■□□□ 1.68
SHMT1-207ENST00000580002 SEMA5AQ13591 1074 aa25.54■■□□□ 1.68
SHMT1-207ENST00000580002 ZBTB9Q96C00 473 aa25.54■■□□□ 1.68
SHMT1-207ENST00000580002 RBM15Q96T37 977 aaKnown RBP eCLIP25.54■■□□□ 1.68
SHMT1-207ENST00000580002 KIF26AQ9ULI4 1882 aaPredicted RBP25.53■■□□□ 1.68
SHMT1-207ENST00000580002 CCDC151A5D8V7 595 aa25.53■■□□□ 1.68
SHMT1-207ENST00000580002 AVILO75366 819 aa25.53■■□□□ 1.68
SHMT1-207ENST00000580002 SOX9P48436 509 aa25.53■■□□□ 1.68
SHMT1-207ENST00000580002 MSS51Q4VC12 460 aa25.53■■□□□ 1.68
SHMT1-207ENST00000580002 HP1BP3Q5SSJ5 553 aaPredicted RBP25.53■■□□□ 1.68
SHMT1-207ENST00000580002 BEND6Q5SZJ8 279 aaPredicted RBP25.53■■□□□ 1.68
SHMT1-207ENST00000580002 FNBP1LQ5T0N5 605 aa25.53■■□□□ 1.68
SHMT1-207ENST00000580002 FMO2Q99518 471 aa25.53■■□□□ 1.68
SHMT1-207ENST00000580002 COL6A3P12111 3177 aa25.52■■□□□ 1.68
SHMT1-207ENST00000580002 CHADO15335 359 aa25.52■■□□□ 1.68
SHMT1-207ENST00000580002 USP12O75317 370 aa25.52■■□□□ 1.68
SHMT1-207ENST00000580002 TMCC1O94876 653 aa25.52■■□□□ 1.68
SHMT1-207ENST00000580002 MMP2P08253 660 aa25.52■■□□□ 1.68
SHMT1-207ENST00000580002 FDFT1P37268 417 aa25.52■■□□□ 1.68
SHMT1-207ENST00000580002 MORF4L2Q15014 288 aa25.52■■□□□ 1.68
SHMT1-207ENST00000580002 KIAA0907Q7Z7F0 614 aaPredicted RBP25.52■■□□□ 1.68
SHMT1-207ENST00000580002 PRPF39Q86UA1 669 aaKnown RBP25.52■■□□□ 1.68
SHMT1-207ENST00000580002 CCDC25Q86WR0 208 aa25.52■■□□□ 1.68
SHMT1-207ENST00000580002 ARRDC2Q8TBH0 407 aa25.52■■□□□ 1.68
SHMT1-207ENST00000580002 NSMCE1Q8WV22 266 aa25.52■■□□□ 1.68
SHMT1-207ENST00000580002 NEBLO76041 1014 aa25.51■■□□□ 1.67
SHMT1-207ENST00000580002 TUBBP07437 444 aa25.51■■□□□ 1.67
SHMT1-207ENST00000580002 MCM3P25205 808 aa25.51■■□□□ 1.67
SHMT1-207ENST00000580002 GJA4P35212 333 aa25.51■■□□□ 1.67
SHMT1-207ENST00000580002 DGKGP49619 791 aa25.51■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms