RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 SLC20A2Q08357 652 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 OVGP1Q12889 678 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 ZNF177Q13360 481 aaPredicted RBP6.88□□□□□ -1.31
VPS53-213ENST00000572334 RTP5Q14D33 572 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 ACAP1Q15027 740 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 INAVAQ3KP66 663 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 ACCSLQ4AC99 568 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 TMEM259Q4ZIN3 620 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 BRMS1LQ5PSV4 323 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 HES3Q5TGS1 186 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 FAM46CQ5VWP2 391 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 LINGO4Q6UY18 593 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 GCNT7Q6ZNI0 430 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 PRPF39Q86UA1 669 aaKnown RBP6.88□□□□□ -1.31
VPS53-213ENST00000572334 CCDC117Q8IWD4 279 aaPredicted RBP6.88□□□□□ -1.31
VPS53-213ENST00000572334 TMIEQ8NEW7 156 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 OR13H1Q8NG92 308 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 OR7D4Q8NG98 312 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 KLK6Q92876 244 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 RNF34Q969K3 372 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 BMFQ96LC9 184 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 TBCBQ99426 244 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 MAGEB5Q9BZ81 275 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 SIK2Q9H0K1 926 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 PREBQ9HCU5 417 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 FZD3Q9NPG1 666 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 NDFIP2Q9NV92 336 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP6.88□□□□□ -1.31
VPS53-213ENST00000572334 SLC25A13Q9UJS0 675 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 VPS28Q9UK41 221 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 NEU3Q9UQ49 428 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 FHOD1Q9Y613 1164 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 ACTL7AQ9Y615 435 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 WASF2Q9Y6W5 498 aa6.88□□□□□ -1.31
VPS53-213ENST00000572334 C1QTNF3-AMACRE9PGA6 284 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 PRAMEF26H0Y7S4 382 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 RAD51BO15315 384 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 SLC31A1O15431 190 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 SPINT1O43278 529 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 SIGLEC6O43699 453 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 BNIP3LO60238 219 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 ENDOD1O94919 500 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 RHOCP08134 193 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 THEGLP0DJG4 465 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 MYF5P13349 255 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 JUPP14923 745 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 CYP11B1P15538 503 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 CKMT2P17540 419 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 DGKAP23743 735 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 NUDT1P36639 197 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 SCNN1AP37088 669 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 EIF2S3P41091 472 aaKnown RBP6.87□□□□□ -1.31
VPS53-213ENST00000572334 ARRB1P49407 418 aaPredicted RBP6.87□□□□□ -1.31
VPS53-213ENST00000572334 SULT1E1P49888 294 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 CLDN2P57739 230 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 RNASE9P60153 205 aaKnown RBP6.87□□□□□ -1.31
VPS53-213ENST00000572334 UBE2HP62256 183 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 NOMO3P69849 1222 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 MTA1Q13330 715 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 ILKQ13418 452 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 STAT4Q14765 748 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 DRAP1Q14919 205 aaPredicted RBP6.87□□□□□ -1.31
VPS53-213ENST00000572334 MAN2A1Q16706 1144 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 DPCR1Q3MIW9 517 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 SLC25A52Q3SY17 297 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 VWA3BQ502W6 1294 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 SETMARQ53H47 684 aaPredicted RBP6.87□□□□□ -1.31
VPS53-213ENST00000572334 ARSIQ5FYB1 569 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 TPRG1LQ5T0D9 272 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 MANEALQ5VSG8 457 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 KLHDC7AQ5VTJ3 777 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 SEL1L3Q68CR1 1132 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 NEK5Q6P3R8 708 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 C22orf39Q6P5X5 142 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 KDM7AQ6ZMT4 941 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 DPY19L3Q6ZPD9 716 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 TFAP2DQ7Z6R9 452 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 ABI3BPQ7Z7G0 1075 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 DSG4Q86SJ6 1040 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 SETD3Q86TU7 594 aaPredicted RBP6.87□□□□□ -1.31
VPS53-213ENST00000572334 NOP9Q86U38 636 aaKnown RBP6.87□□□□□ -1.31
VPS53-213ENST00000572334 HORMAD1Q86X24 394 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 ZDHHC17Q8IUH5 632 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 CACTIN-AS1Q8N1I8 211 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 OXR1Q8N573 874 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 DCBLD1Q8N8Z6 715 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 DCAF4L2Q8NA75 395 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 EPS8L1Q8TE68 723 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 SKA1Q96BD8 255 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 C1orf74Q96LT6 269 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 MYOCQ99972 504 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 HDAC8Q9BY41 377 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 NRSN2Q9GZP1 204 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 MUC3BQ9H195 1237 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 TNKS2Q9H2K2 1166 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 NDST4Q9H3R1 872 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 PRORYQ9H606 182 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 WDCPQ9H6R7 721 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 KLHL11Q9NVR0 708 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 RRN3Q9NYV6 651 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms