RNA–Protein interactions for RNA: ENST00000557076.5

SCFD1-223, Transcript of sec1 family domain containing 1, human

TSL 3

Gene SCFD1, Length 743 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCFD1-223	ENST00000557076	DDX42	Q86XP3	938 aa	Known RBP eCLIP	5	□□□□□ -1.61
SCFD1-223	ENST00000557076	DHX40	Q8IX18	779 aa	Known RBP	5	□□□□□ -1.61
SCFD1-223	ENST00000557076	CHPF	Q8IZ52	775 aa		5	□□□□□ -1.61
SCFD1-223	ENST00000557076	CLEC18C	Q8NCF0	446 aa		5	□□□□□ -1.61
SCFD1-223	ENST00000557076	FRS2	Q8WU20	508 aa		5	□□□□□ -1.61
SCFD1-223	ENST00000557076	SPATA17	Q96L03	361 aa		5	□□□□□ -1.61
SCFD1-223	ENST00000557076	MRGPRX3	Q96LB0	322 aa		5	□□□□□ -1.61
SCFD1-223	ENST00000557076	DRC1	Q96MC2	740 aa		5	□□□□□ -1.61
SCFD1-223	ENST00000557076	ACOX2	Q99424	681 aa		5	□□□□□ -1.61
SCFD1-223	ENST00000557076	ACBD6	Q9BR61	282 aa		5	□□□□□ -1.61
SCFD1-223	ENST00000557076	L2HGDH	Q9H9P8	463 aa		5	□□□□□ -1.61
SCFD1-223	ENST00000557076	NCOA5	Q9HCD5	579 aa	Known RBP	5	□□□□□ -1.61
SCFD1-223	ENST00000557076	TMLHE	Q9NVH6	421 aa		5	□□□□□ -1.61
SCFD1-223	ENST00000557076	TRPM5	Q9NZQ8	1165 aa		5	□□□□□ -1.61
SCFD1-223	ENST00000557076	PPP4R1L	Q9P1A2	415 aa		5	□□□□□ -1.61
SCFD1-223	ENST00000557076	EIF2B4	Q9UI10	523 aa	Known RBP	5	□□□□□ -1.61
SCFD1-223	ENST00000557076	STRIP2	Q9ULQ0	834 aa		5	□□□□□ -1.61
SCFD1-223	ENST00000557076	KCNJ14	Q9UNX9	436 aa		5	□□□□□ -1.61
SCFD1-223	ENST00000557076	DERA	Q9Y315	318 aa		5	□□□□□ -1.61
SCFD1-223	ENST00000557076	ZFHX3	Q15911	3703 aa		5	□□□□□ -1.61
SCFD1-223	ENST00000557076	BSN	Q9UPA5	3926 aa		5	□□□□□ -1.61
SCFD1-223	ENST00000557076	HELZ	P42694	1942 aa	Known RBP	4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	RP1L1	Q8IWN7	2480 aa	Predicted RBP	4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	NUP210	Q8TEM1	1887 aa	Predicted RBP	4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	KIF26A	Q9ULI4	1882 aa	Predicted RBP	4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076		A0A1B0GTQ1	180 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	ZNF840P	A6NDX5	716 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	NPEPPSL1	A6NEC2	478 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	BTBD18	B2RXH4	712 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	KCNJ18	B7U540	433 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	KCNK3	O14649	394 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	CPLX1	O14810	134 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	NPC1	O15118	1278 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	SFTPC	P11686	197 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	XBP1	P17861	261 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	ITGB6	P18564	788 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	CDC25A	P30304	524 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	WAS	P42768	502 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	MAGEA11	P43364	429 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	LSS	P48449	732 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	NASP	P49321	788 aa	Predicted RBP	4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	ACADVL	P49748	655 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	HMGA2	P52926	109 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	POU5F1	Q01860	360 aa	Known RBP	4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	KDSR	Q06136	332 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	NFATC3	Q12968	1075 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	STRN3	Q13033	797 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	ARL13B	Q3SXY8	428 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	EARS2	Q5JPH6	523 aa	Known RBP	4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	KCNT1	Q5JUK3	1230 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	C10orf76	Q5T2E6	689 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	USP51	Q70EK9	711 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	CIR1	Q86X95	450 aa	Predicted RBP	4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	TMEM25	Q86YD3	366 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	TMPRSS6	Q8IU80	811 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	EXD3	Q8N9H8	876 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	TERB1	Q8NA31	727 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	ERMN	Q8TAM6	284 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	DIO2	Q92813	273 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	NAF1	Q96HR8	494 aa	Known RBP	4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	FUBP3	Q96I24	572 aa	Known RBP eCLIP	4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	CNDP2	Q96KP4	475 aa	Known RBP	4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	AIFM3	Q96NN9	605 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	CLIC6	Q96NY7	704 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	SEMA3C	Q99985	751 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	KLC2	Q9H0B6	622 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	TMEM168	Q9H0V1	697 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	TM9SF3	Q9HD45	589 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	KMT5A	Q9NQR1	393 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	SPHK2	Q9NRA0	654 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	DTL	Q9NZJ0	730 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	EHD2	Q9NZN4	543 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	CFAP97	Q9P2B7	532 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	CLCA2	Q9UQC9	943 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	TNRC6B	Q9UPQ9	1833 aa	Known RBP	4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	PLXND1	Q9Y4D7	1925 aa		4.99	□□□□□ -1.61
SCFD1-223	ENST00000557076	CACNA1D	Q01668	2161 aa		4.98	□□□□□ -1.61
SCFD1-223	ENST00000557076	CELSR2	Q9HCU4	2923 aa		4.98	□□□□□ -1.61
SCFD1-223	ENST00000557076	ICE1	Q9Y2F5	2266 aa		4.98	□□□□□ -1.61
SCFD1-223	ENST00000557076	KPNA7	A9QM74	516 aa		4.98	□□□□□ -1.61
SCFD1-223	ENST00000557076	WASH3P	C4AMC7	463 aa		4.98	□□□□□ -1.61
SCFD1-223	ENST00000557076	PRRT4	C9JH25	899 aa		4.98	□□□□□ -1.61
SCFD1-223	ENST00000557076	LAD1	O00515	517 aa		4.98	□□□□□ -1.61
SCFD1-223	ENST00000557076	HGS	O14964	777 aa	Predicted RBP	4.98	□□□□□ -1.61
SCFD1-223	ENST00000557076	TRIM24	O15164	1050 aa		4.98	□□□□□ -1.61
SCFD1-223	ENST00000557076	VILL	O15195	856 aa		4.98	□□□□□ -1.61
SCFD1-223	ENST00000557076	KLK10	O43240	276 aa		4.98	□□□□□ -1.61
SCFD1-223	ENST00000557076	FAM189A1	O60320	539 aa		4.98	□□□□□ -1.61
SCFD1-223	ENST00000557076	NEMF	O60524	1076 aa		4.98	□□□□□ -1.61
SCFD1-223	ENST00000557076	TSPAN3	O60637	253 aa		4.98	□□□□□ -1.61
SCFD1-223	ENST00000557076	OAS1	P00973	400 aa	Known RBP	4.98	□□□□□ -1.61
SCFD1-223	ENST00000557076	ITGAV	P06756	1048 aa		4.98	□□□□□ -1.61
SCFD1-223	ENST00000557076	CISD3	P0C7P0	127 aa		4.98	□□□□□ -1.61
SCFD1-223	ENST00000557076	HARS	P12081	509 aa	Known RBP	4.98	□□□□□ -1.61
SCFD1-223	ENST00000557076	CPA1	P15085	419 aa		4.98	□□□□□ -1.61
SCFD1-223	ENST00000557076	CKMT2	P17540	419 aa		4.98	□□□□□ -1.61
SCFD1-223	ENST00000557076	CD27	P26842	260 aa		4.98	□□□□□ -1.61
SCFD1-223	ENST00000557076	HOXC12	P31275	282 aa		4.98	□□□□□ -1.61
SCFD1-223	ENST00000557076	GUCY2F	P51841	1108 aa		4.98	□□□□□ -1.61
SCFD1-223	ENST00000557076	CLDN6	P56747	220 aa		4.98	□□□□□ -1.61

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