RNA–Protein interactions for RNA: ENST00000556992.1

SRP54-212, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 529 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-212ENST00000556992 CD101Q93033 1021 aa4.67□□□□□ -1.66
SRP54-212ENST00000556992 RPL10LQ96L21 214 aaKnown RBP4.67□□□□□ -1.66
SRP54-212ENST00000556992 RNPC3Q96LT9 517 aaKnown RBP4.67□□□□□ -1.66
SRP54-212ENST00000556992 AP1M1Q9BXS5 423 aa4.67□□□□□ -1.66
SRP54-212ENST00000556992 RAB17Q9H0T7 212 aa4.67□□□□□ -1.66
SRP54-212ENST00000556992 UPF3AQ9H1J1 476 aaKnown RBP4.67□□□□□ -1.66
SRP54-212ENST00000556992 SYNCQ9H7C4 482 aa4.67□□□□□ -1.66
SRP54-212ENST00000556992 EPB41L5Q9HCM4 733 aa4.67□□□□□ -1.66
SRP54-212ENST00000556992 GDF3Q9NR23 364 aa4.67□□□□□ -1.66
SRP54-212ENST00000556992 SLC38A7Q9NVC3 462 aa4.67□□□□□ -1.66
SRP54-212ENST00000556992 SLTMQ9NWH9 1034 aaKnown RBP eCLIP4.67□□□□□ -1.66
SRP54-212ENST00000556992 AURKAIP1Q9NWT8 199 aaPredicted RBP4.67□□□□□ -1.66
SRP54-212ENST00000556992 PFDN2Q9UHV9 154 aa4.67□□□□□ -1.66
SRP54-212ENST00000556992 SIX4Q9UIU6 781 aa4.67□□□□□ -1.66
SRP54-212ENST00000556992 ANAPC7Q9UJX3 599 aa4.67□□□□□ -1.66
SRP54-212ENST00000556992 BARX2Q9UMQ3 279 aaPredicted RBP4.67□□□□□ -1.66
SRP54-212ENST00000556992 UBQLN1Q9UMX0 589 aaKnown RBP4.67□□□□□ -1.66
SRP54-212ENST00000556992 UTP11Q9Y3A2 253 aaKnown RBP4.67□□□□□ -1.66
SRP54-212ENST00000556992 UNC80Q8N2C7 3258 aa4.67□□□□□ -1.66
SRP54-212ENST00000556992 MUC3AQ02505 3323 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 SMIM28A0A1B0GU29 152 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 SIGLEC16A6NMB1 481 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 ARVCFO00192 962 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 AQP7O14520 342 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 WNT9AO14904 365 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 PSTPIP1O43586 416 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 OPA1O60313 960 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 CLASP2O75122 1294 aaKnown RBP4.66□□□□□ -1.66
SRP54-212ENST00000556992 SEC31AO94979 1220 aaKnown RBP4.66□□□□□ -1.66
SRP54-212ENST00000556992 HEXIM1O94992 359 aaKnown RBP4.66□□□□□ -1.66
SRP54-212ENST00000556992 CALCAP01258 141 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 KRT3P12035 628 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 CYBAP13498 195 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 GNL1P36915 607 aaPredicted RBP4.66□□□□□ -1.66
SRP54-212ENST00000556992 TNNT3P45378 269 aaPredicted RBP4.66□□□□□ -1.66
SRP54-212ENST00000556992 CDH8P55286 799 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 MRPS6P82932 125 aaKnown RBP4.66□□□□□ -1.66
SRP54-212ENST00000556992 CBX1P83916 185 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 DR1Q01658 176 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 INCA1Q0VD86 236 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 DEFB115Q30KQ5 88 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 ODF2Q5BJF6 829 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 XKR4Q5GH76 650 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 DENND1BQ6P3S1 775 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 DNAJC24Q6P3W2 148 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 LCLAT1Q6UWP7 414 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 GAREM2Q75VX8 874 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 C16orf59Q7L2K0 433 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 DPH6Q7L8W6 267 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 SERINC5Q86VE9 423 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 SESTD1Q86VW0 696 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 SLC13A5Q86YT5 568 aaPredicted RBP4.66□□□□□ -1.66
SRP54-212ENST00000556992 VRK3Q8IV63 474 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 PASD1Q8IV76 773 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 KATNAL2Q8IYT4 538 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 WDTC1Q8N5D0 677 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 SLC4A11Q8NBS3 891 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 TRPV1Q8NER1 839 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 EXD1Q8NHP7 514 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 AENQ8WTP8 325 aaKnown RBP4.66□□□□□ -1.66
SRP54-212ENST00000556992 TFAP2BQ92481 460 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 CAVIN3Q969G5 261 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 MAGOHBQ96A72 148 aaKnown RBP4.66□□□□□ -1.66
SRP54-212ENST00000556992 VOPP1Q96AW1 172 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 C18orf8Q96DM3 657 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 SNX27Q96L92 541 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 NCAPGQ9BPX3 1015 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 C11orf70Q9BRQ4 267 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 ERP44Q9BS26 406 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 SPATA9Q9BWV2 254 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 SEZ6LQ9BYH1 1024 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 UBXN6Q9BZV1 441 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 TSPYL1Q9H0U9 437 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 SNX25Q9H3E2 840 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 GOLPH3Q9H4A6 298 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 UBN1Q9NPG3 1134 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 MED4Q9NPJ6 270 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 XPNPEP3Q9NQH7 507 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 FAM114A2Q9NRY5 505 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 GDAP2Q9NXN4 497 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 DDX56Q9NY93 547 aaKnown RBP4.66□□□□□ -1.66
SRP54-212ENST00000556992 SNTG2Q9NY99 539 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 SMARCAL1Q9NZC9 954 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 EHD2Q9NZN4 543 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 CHORDC1Q9UHD1 332 aaPredicted RBP4.66□□□□□ -1.66
SRP54-212ENST00000556992 PCYOX1Q9UHG3 505 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 RASAL2Q9UJF2 1139 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 PIN4Q9Y237 131 aaKnown RBP4.66□□□□□ -1.66
SRP54-212ENST00000556992 COQ6Q9Y2Z9 468 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 NOC2LQ9Y3T9 749 aaKnown RBP4.66□□□□□ -1.66
SRP54-212ENST00000556992 UMODL1Q5DID0 1318 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 MYH7BA7E2Y1 1941 aa4.66□□□□□ -1.66
SRP54-212ENST00000556992 PAPPA2Q9BXP8 1791 aa4.65□□□□□ -1.66
SRP54-212ENST00000556992 PHIPQ8WWQ0 1821 aa4.65□□□□□ -1.66
SRP54-212ENST00000556992 GOLGA6BA6NDN3 693 aa4.65□□□□□ -1.67
SRP54-212ENST00000556992 KPNA7A9QM74 516 aa4.65□□□□□ -1.67
SRP54-212ENST00000556992 O00370 1275 aa4.65□□□□□ -1.67
SRP54-212ENST00000556992 PIRO00625 290 aa4.65□□□□□ -1.67
SRP54-212ENST00000556992 RAD51CO43502 376 aa4.65□□□□□ -1.67
SRP54-212ENST00000556992 HUS1O60921 280 aa4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms