RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 CCDC183Q5T5S1 534 aa11.11□□□□□ -0.63
VTI1BP3-201ENST00000550220 PIP5KL1Q5T9C9 394 aa11.11□□□□□ -0.63
VTI1BP3-201ENST00000550220 RWDD4Q6NW29 188 aaKnown RBP11.11□□□□□ -0.63
VTI1BP3-201ENST00000550220 C22orf39Q6P5X5 142 aa11.11□□□□□ -0.63
VTI1BP3-201ENST00000550220 LAYNQ6UX15 382 aa11.11□□□□□ -0.63
VTI1BP3-201ENST00000550220 TMPRSS12Q86WS5 348 aa11.11□□□□□ -0.63
VTI1BP3-201ENST00000550220 HORMAD1Q86X24 394 aa11.11□□□□□ -0.63
VTI1BP3-201ENST00000550220 DCP2Q8IU60 420 aaKnown RBP11.11□□□□□ -0.63
VTI1BP3-201ENST00000550220 EMC1Q8N766 993 aa11.11□□□□□ -0.63
VTI1BP3-201ENST00000550220 C3orf20Q8ND61 904 aa11.11□□□□□ -0.63
VTI1BP3-201ENST00000550220 SLC20A1Q8WUM9 679 aa11.11□□□□□ -0.63
VTI1BP3-201ENST00000550220 NTAN1Q96AB6 310 aa11.11□□□□□ -0.63
VTI1BP3-201ENST00000550220 KLHDC7BQ96G42 594 aa11.11□□□□□ -0.63
VTI1BP3-201ENST00000550220 FEM1CQ96JP0 617 aa11.11□□□□□ -0.63
VTI1BP3-201ENST00000550220 HEPHQ9BQS7 1158 aa11.11□□□□□ -0.63
VTI1BP3-201ENST00000550220 C11orf70Q9BRQ4 267 aa11.11□□□□□ -0.63
VTI1BP3-201ENST00000550220 CCDC86Q9H6F5 360 aaKnown RBP11.11□□□□□ -0.63
VTI1BP3-201ENST00000550220 TOR4AQ9NXH8 423 aa11.11□□□□□ -0.63
VTI1BP3-201ENST00000550220 ZNF212Q9UDV6 495 aa11.11□□□□□ -0.63
VTI1BP3-201ENST00000550220 MYO6Q9UM54 1294 aa11.11□□□□□ -0.63
VTI1BP3-201ENST00000550220 BTBD3Q9Y2F9 522 aa11.11□□□□□ -0.63
VTI1BP3-201ENST00000550220 SNX10Q9Y5X0 201 aa11.11□□□□□ -0.63
VTI1BP3-201ENST00000550220 USP24Q9UPU5 2620 aa11.11□□□□□ -0.63
VTI1BP3-201ENST00000550220 ADAMTS9Q9P2N4 1935 aa11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 A0A1W2PQU0 124 aa11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 SRRM3A6NNA2 597 aaPredicted RBP11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 K7ERQ8 282 aa11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 SMAD6O43541 496 aaKnown RBP11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 CTSLP07711 333 aa11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 PLEKP08567 350 aaPredicted RBP11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 FERP16591 822 aa11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 RRM1P23921 792 aa11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 ITGB7P26010 798 aa11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 EPHA8P29322 1005 aaPredicted RBP11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 MAT2AP31153 395 aaKnown RBP11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 NUMBP49757 651 aa11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 KLK7P49862 253 aa11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 NEK3P51956 506 aa11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 RPS21P63220 83 aaKnown RBP11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 SCAPQ12770 1279 aa11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 ILKQ13418 452 aa11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 POLD3Q15054 466 aaPredicted RBP11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 SMAD1Q15797 465 aaKnown RBP11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 CDO1Q16878 200 aa11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 CLEC16AQ2KHT3 1053 aa11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 POM121L1PQ3SYA9 428 aa11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 ARSIQ5FYB1 569 aa11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 KIAA1161Q6NSJ0 714 aa11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 TRNP1Q6NT89 227 aa11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 FBXL19Q6PCT2 694 aa11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 LINGO4Q6UY18 593 aa11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 DPY19L3Q6ZPD9 716 aa11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 SLFN11Q7Z7L1 901 aa11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 OR7D4Q8NG98 312 aa11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 SLC30A5Q8TAD4 765 aa11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 CASKIN2Q8WXE0 1202 aa11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 RAB7BQ96AH8 199 aa11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 TBC1D31Q96DN5 1066 aa11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 ARHGEF26Q96DR7 871 aa11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 IFT43Q96FT9 208 aa11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 VCPIP1Q96JH7 1222 aa11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 CNDP2Q96KP4 475 aaKnown RBP11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 AGPAT1Q99943 283 aa11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 TMEM248Q9NWD8 314 aa11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 DKK4Q9UBT3 224 aa11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 HS3ST3A1Q9Y663 406 aa11.1□□□□□ -0.63
VTI1BP3-201ENST00000550220 KNTC1P50748 2209 aa11.09□□□□□ -0.63
VTI1BP3-201ENST00000550220 IGF2RP11717 2491 aa11.09□□□□□ -0.63
VTI1BP3-201ENST00000550220 GOLGA8CPA6NN73 597 aa11.09□□□□□ -0.63
VTI1BP3-201ENST00000550220 SMTNL1A8MU46 457 aa11.09□□□□□ -0.63
VTI1BP3-201ENST00000550220 PLK4O00444 970 aa11.09□□□□□ -0.63
VTI1BP3-201ENST00000550220 ENC1O14682 589 aa11.09□□□□□ -0.63
VTI1BP3-201ENST00000550220 RIOK3O14730 519 aaKnown RBP11.09□□□□□ -0.63
VTI1BP3-201ENST00000550220 WNT9AO14904 365 aa11.09□□□□□ -0.63
VTI1BP3-201ENST00000550220 EPHB6O15197 1021 aa11.09□□□□□ -0.63
VTI1BP3-201ENST00000550220 SLC31A1O15431 190 aa11.09□□□□□ -0.63
VTI1BP3-201ENST00000550220 TSPAN6O43657 245 aa11.09□□□□□ -0.63
VTI1BP3-201ENST00000550220 AP1G1O43747 822 aa11.09□□□□□ -0.63
VTI1BP3-201ENST00000550220 RAMP2O60895 175 aa11.09□□□□□ -0.63
VTI1BP3-201ENST00000550220 LEFTY1O75610 366 aa11.09□□□□□ -0.63
VTI1BP3-201ENST00000550220 LRIG2O94898 1065 aa11.09□□□□□ -0.63
VTI1BP3-201ENST00000550220 PCDH8O95206 1070 aa11.09□□□□□ -0.63
VTI1BP3-201ENST00000550220 POP4O95707 220 aaKnown RBP11.09□□□□□ -0.63
VTI1BP3-201ENST00000550220 GPD1P21695 349 aa11.09□□□□□ -0.63
VTI1BP3-201ENST00000550220 HNRNPA2B1P22626 353 aaKnown RBP11.09□□□□□ -0.63
VTI1BP3-201ENST00000550220 L1CAMP32004 1257 aa11.09□□□□□ -0.63
VTI1BP3-201ENST00000550220 HTR7P34969 479 aa11.09□□□□□ -0.63
VTI1BP3-201ENST00000550220 RFC1P35251 1148 aaPredicted RBP11.09□□□□□ -0.63
VTI1BP3-201ENST00000550220 HNF1BP35680 557 aa11.09□□□□□ -0.63
VTI1BP3-201ENST00000550220 DNA2P51530 1060 aa11.09□□□□□ -0.63
VTI1BP3-201ENST00000550220 ZNF143P52747 638 aaPredicted RBP11.09□□□□□ -0.63
VTI1BP3-201ENST00000550220 METAP1P53582 386 aa11.09□□□□□ -0.63
VTI1BP3-201ENST00000550220 HDAC4P56524 1084 aa11.09□□□□□ -0.63
VTI1BP3-201ENST00000550220 TAS2R38P59533 333 aa11.09□□□□□ -0.63
VTI1BP3-201ENST00000550220 SNRPD1P62314 119 aaKnown RBP11.09□□□□□ -0.63
VTI1BP3-201ENST00000550220 ARF5P84085 180 aa11.09□□□□□ -0.63
VTI1BP3-201ENST00000550220 IL9RQ01113 521 aa11.09□□□□□ -0.63
VTI1BP3-201ENST00000550220 RAD51Q06609 339 aa11.09□□□□□ -0.63
VTI1BP3-201ENST00000550220 PTP4A2Q12974 167 aa11.09□□□□□ -0.63
VTI1BP3-201ENST00000550220 SHBQ15464 509 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms