RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 TMBIM4Q9HC24 238 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 OSGEPQ9NPF4 335 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 MIEF1Q9NQG6 463 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 TBC1D13Q9NVG8 400 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 ZNHIT2Q9UHR6 403 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 TMCO1Q9UM00 188 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 MAGEC1O60732 1142 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 TBL1XO60907 577 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 LSM8O95777 96 aaKnown RBP8.73□□□□□ -1.01
CLIP1-218ENST00000545889 PEX5P50542 639 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 SLC16A1P53985 500 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 C6orf183Q5T699 404 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 ZNF618Q5T7W0 954 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 WDR59Q6PJI9 974 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 C3orf62Q6ZUJ4 267 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 PRPF39Q86UA1 669 aaKnown RBP8.73□□□□□ -1.01
CLIP1-218ENST00000545889 SCUBE3Q8IX30 993 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 B3GALNT2Q8NCR0 500 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 HERVK_113Q902F9 699 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 CLIP3Q96DZ5 547 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 RNF39Q9H2S5 420 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 DMAC2Q9NW81 257 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 CRYL1Q9Y2S2 319 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 DDX3XO00571 662 aaKnown RBP eCLIP8.73□□□□□ -1.01
CLIP1-218ENST00000545889 GYG2O15488 501 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 GJB6O95452 261 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 CATP04040 527 aaKnown RBP8.73□□□□□ -1.01
CLIP1-218ENST00000545889 SHBGP04278 402 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 PYGMP11217 842 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 ATP6V1C1P21283 382 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 DGKEP52429 567 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 MTTPP55157 894 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 GJA9P57773 515 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 GRSF1Q12849 480 aaKnown RBP eCLIP8.73□□□□□ -1.01
CLIP1-218ENST00000545889 SDHAF4Q5VUM1 108 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 RAP1GAP2Q684P5 730 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 C12orf56Q8IXR9 622 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 ING5Q8WYH8 240 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 BAP1Q92560 729 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 SYN2Q92777 582 aaPredicted RBP8.73□□□□□ -1.01
CLIP1-218ENST00000545889 PANX3Q96QZ0 392 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 NAT9Q9BTE0 207 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 POPDC2Q9HBU9 364 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 RGS18Q9NS28 235 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 SCHIP1Q9P0W5 487 aaPredicted RBP8.73□□□□□ -1.01
CLIP1-218ENST00000545889 SAE1Q9UBE0 346 aaPredicted RBP8.73□□□□□ -1.01
CLIP1-218ENST00000545889 TRPC4Q9UBN4 977 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 WARS2Q9UGM6 360 aaKnown RBP8.73□□□□□ -1.01
CLIP1-218ENST00000545889 GPN3Q9UHW5 284 aaPredicted RBP8.73□□□□□ -1.01
CLIP1-218ENST00000545889 ATP6V1HQ9UI12 483 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 PADI4Q9UM07 663 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 CAPN6Q9Y6Q1 641 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 GRID2IPA4D2P6 1211 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 ZNF839A8K0R7 811 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 O00370 1275 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 EPHX1P07099 455 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 SNRPAP09012 282 aaKnown RBP8.73□□□□□ -1.01
CLIP1-218ENST00000545889 ENO2P09104 434 aaPredicted RBP8.73□□□□□ -1.01
CLIP1-218ENST00000545889 CYBAP13498 195 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 CALB2P22676 271 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 TARSP26639 723 aaKnown RBP8.73□□□□□ -1.01
CLIP1-218ENST00000545889 VHLP40337 213 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 SMARCB1Q12824 385 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 RCN1Q15293 331 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 CACHD1Q5VU97 1274 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 ISLR2Q6UXK2 745 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 PTAR1Q7Z6K3 402 aaPredicted RBP8.73□□□□□ -1.01
CLIP1-218ENST00000545889 ZDHHC17Q8IUH5 632 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 BBS7Q8IWZ6 715 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 ZFAND2BQ8WV99 257 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 LRRC40Q9H9A6 602 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 NDE1Q9NXR1 346 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 CLIC5Q9NZA1 410 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 UTRNP46939 3433 aa8.73□□□□□ -1.01
CLIP1-218ENST00000545889 LTBP1Q14766 1721 aa8.72□□□□□ -1.01
CLIP1-218ENST00000545889 CCDC130P13994 396 aa8.72□□□□□ -1.01
CLIP1-218ENST00000545889 PTDSS1P48651 473 aaKnown RBP8.72□□□□□ -1.01
CLIP1-218ENST00000545889 NPY2RP49146 381 aa8.72□□□□□ -1.01
CLIP1-218ENST00000545889 DMC1Q14565 340 aa8.72□□□□□ -1.01
CLIP1-218ENST00000545889 DDR2Q16832 855 aa8.72□□□□□ -1.01
CLIP1-218ENST00000545889 SLC10A6Q3KNW5 377 aa8.72□□□□□ -1.01
CLIP1-218ENST00000545889 TAS1R3Q7RTX0 852 aa8.72□□□□□ -1.01
CLIP1-218ENST00000545889 APTXQ7Z2E3 356 aaKnown RBP8.72□□□□□ -1.01
CLIP1-218ENST00000545889 TRAPPC9Q96Q05 1148 aa8.72□□□□□ -1.01
CLIP1-218ENST00000545889 TKTL2Q9H0I9 626 aa8.72□□□□□ -1.01
CLIP1-218ENST00000545889 TAS2R14Q9NYV8 317 aa8.72□□□□□ -1.01
CLIP1-218ENST00000545889 PLK2Q9NYY3 685 aa8.72□□□□□ -1.01
CLIP1-218ENST00000545889 CFAP97Q9P2B7 532 aa8.72□□□□□ -1.01
CLIP1-218ENST00000545889 GMEB2Q9UKD1 530 aa8.72□□□□□ -1.01
CLIP1-218ENST00000545889 STARD13Q9Y3M8 1113 aa8.72□□□□□ -1.01
CLIP1-218ENST00000545889 SNX5Q9Y5X3 404 aa8.72□□□□□ -1.01
CLIP1-218ENST00000545889 MYO7AQ13402 2215 aa8.72□□□□□ -1.01
CLIP1-218ENST00000545889 SMIM28A0A1B0GU29 152 aa8.72□□□□□ -1.01
CLIP1-218ENST00000545889 NEDD8-MDP1E9PL57 170 aa8.72□□□□□ -1.01
CLIP1-218ENST00000545889 RNASEH2AO75792 299 aaKnown RBP8.72□□□□□ -1.01
CLIP1-218ENST00000545889 TRUB2O95900 331 aaKnown RBP8.72□□□□□ -1.01
CLIP1-218ENST00000545889 PTPN2P17706 415 aa8.72□□□□□ -1.01
CLIP1-218ENST00000545889 ITIH2P19823 946 aa8.72□□□□□ -1.01
CLIP1-218ENST00000545889 ITGAXP20702 1163 aa8.72□□□□□ -1.01
CLIP1-218ENST00000545889 GRM5P41594 1212 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms