RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 KCNMB4Q86W47 210 aa16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 PDSS2Q86YH6 399 aa16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 HPS6Q86YV9 775 aa16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 TMEM151AQ8N4L1 468 aa16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 ZSCAN18Q8TBC5 510 aaPredicted RBP16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 DPF3Q92784 378 aa16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 MOCOSQ96EN8 888 aa16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 SMOQ99835 787 aa16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 MED10Q9BTT4 135 aa16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 EBF3Q9H4W6 596 aa16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 NMRAL1Q9HBL8 299 aa16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 TMEM30AQ9NV96 361 aa16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 LMCD1Q9NZU5 365 aa16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 MAGED2Q9UNF1 606 aaPredicted RBP16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 SNX10Q9Y5X0 201 aa16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 ERI2A8K979 691 aaKnown RBP16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 TRIM13O60858 407 aa16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 SMIM24O75264 130 aa16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 SBK3P0C264 359 aa16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 TPH1P17752 444 aa16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 NPY2RP49146 381 aa16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 CSE1LP55060 971 aaKnown RBP16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 MPP3Q13368 585 aa16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 SFT2D3Q587I9 215 aa16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 FBXW8Q8N3Y1 598 aa16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 ZMIZ2Q8NF64 920 aa16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 SLC26A7Q8TE54 656 aa16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 HDAC11Q96DB2 347 aa16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 TSC22D3Q99576 134 aa16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 C1QTNF1Q9BXJ1 281 aa16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 IARS2Q9NSE4 1012 aaKnown RBP16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 CACNG4Q9UBN1 327 aa16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 NCAM2O15394 837 aa16.36■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 FAM200BP0CF97 657 aa16.36■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 NMBRP28336 390 aa16.36■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 GALNT2Q10471 571 aa16.36■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 TBL3Q12788 808 aaKnown RBP16.36■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 ASPHQ12797 758 aa16.36■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 MSLNQ13421 630 aaPredicted RBP16.36■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 FSCBQ5H9T9 825 aa16.36■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 INTS6LQ5JSJ4 861 aaKnown RBP16.36■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 LPCAT4Q643R3 524 aa16.36■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 TDRD5Q8NAT2 981 aaKnown RBP16.36■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 JADE3Q92613 823 aa16.36■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 PPP2R3CQ969Q6 453 aa16.36■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 CCDC124Q96CT7 223 aaKnown RBP16.36■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 PGAP3Q96FM1 320 aaPredicted RBP16.36■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 VPS39Q96JC1 886 aa16.36■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 TUBGCP5Q96RT8 1024 aa16.36■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 KCNK16Q96T55 309 aa16.36■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 C20orf96Q9NUD7 363 aaPredicted RBP16.36■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 OXSMQ9NWU1 459 aa16.36■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 PCDHGA4Q9Y5G9 962 aa16.36■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 MAGEB16A2A368 324 aa16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 TIMM44O43615 452 aa16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 RNASEH1O60930 286 aaKnown RBP16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 ZNF189O75820 626 aaPredicted RBP16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 FBXO21O94952 628 aa16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 PYGLP06737 847 aa16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 CHRNGP07510 517 aa16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 AKR1A1P14550 325 aa16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 MTTPP55157 894 aa16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 IRF5Q13568 498 aa16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 GRM3Q14832 879 aa16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 RAB41Q5JT25 222 aa16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 METTL21CQ5VZV1 264 aa16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 BHLHA9Q7RTU4 235 aa16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 PPP1R10Q96QC0 940 aaKnown RBP16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 RTKNQ9BST9 563 aa16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 ACSS2Q9NR19 701 aa16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 PAPOLBQ9NRJ5 636 aaKnown RBP16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 PDP2Q9P2J9 529 aa16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 TRHDEQ9UKU6 1024 aa16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 FNDC1Q4ZHG4 1894 aaPredicted RBP16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 H3BNX3 289 aa16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 GOLGA8TH3BQL2 631 aa16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 TREHO43280 583 aa16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 MYL3P08590 195 aa16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 ZCCHC18P0CG32 403 aa16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 MPSTP25325 297 aa16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 CCR10P46092 362 aa16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 PGGT1BP53609 377 aa16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 CFAP157Q5JU67 520 aa16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 GNASQ5JWF2 1037 aa16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 TCHHL1Q5QJ38 904 aaPredicted RBP16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 CXCL17Q6UXB2 119 aa16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 B4GALNT2Q8NHY0 566 aa16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 FAM81AQ8TBF8 368 aa16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 AGR3Q8TD06 166 aa16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 TEKT5Q96M29 485 aa16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 ZFP42Q96MM3 310 aa16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 LENG8Q96PV6 779 aaPredicted RBP16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 TRAPPC9Q96Q05 1148 aa16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 BRD8Q9H0E9 1235 aa16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 ARHGAP26Q9UNA1 814 aa16.35■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 MATN2O00339 956 aa16.34■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 USP17L7P0C7H9 530 aa16.34■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 GNAT1P11488 350 aa16.34■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 NCAM1P13591 858 aa16.34■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 MFSD10Q14728 455 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms