RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 LIX1LQ8IVB5 337 aa5.08□□□□□ -1.6
CCDC88A-210ENST00000468534 HERC6Q8IVU3 1022 aa5.08□□□□□ -1.6
CCDC88A-210ENST00000468534 PDCL2Q8N4E4 241 aa5.08□□□□□ -1.6
CCDC88A-210ENST00000468534 AADATQ8N5Z0 425 aa5.08□□□□□ -1.6
CCDC88A-210ENST00000468534 PNLDC1Q8NA58 520 aaKnown RBP5.08□□□□□ -1.6
CCDC88A-210ENST00000468534 GMCL1P1Q8NEA9 526 aa5.08□□□□□ -1.6
CCDC88A-210ENST00000468534 Q8NFD4 153 aa5.08□□□□□ -1.6
CCDC88A-210ENST00000468534 OR52K1Q8NGK4 314 aa5.08□□□□□ -1.6
CCDC88A-210ENST00000468534 ST8SIA4Q92187 359 aa5.08□□□□□ -1.6
CCDC88A-210ENST00000468534 SGCDQ92629 289 aa5.08□□□□□ -1.6
CCDC88A-210ENST00000468534 RILPL2Q969X0 211 aa5.08□□□□□ -1.6
CCDC88A-210ENST00000468534 VPS50Q96JG6 964 aa5.08□□□□□ -1.6
CCDC88A-210ENST00000468534 FEM1CQ96JP0 617 aa5.08□□□□□ -1.6
CCDC88A-210ENST00000468534 MACROD1Q9BQ69 325 aa5.08□□□□□ -1.6
CCDC88A-210ENST00000468534 STK33Q9BYT3 514 aa5.08□□□□□ -1.6
CCDC88A-210ENST00000468534 ACPTQ9BZG2 426 aa5.08□□□□□ -1.6
CCDC88A-210ENST00000468534 TRIM7Q9C029 511 aa5.08□□□□□ -1.6
CCDC88A-210ENST00000468534 STMN4Q9H169 189 aaPredicted RBP5.08□□□□□ -1.6
CCDC88A-210ENST00000468534 THAP9Q9H5L6 903 aa5.08□□□□□ -1.6
CCDC88A-210ENST00000468534 RABEP2Q9H5N1 569 aa5.08□□□□□ -1.6
CCDC88A-210ENST00000468534 WDCPQ9H6R7 721 aa5.08□□□□□ -1.6
CCDC88A-210ENST00000468534 CD93Q9NPY3 652 aa5.08□□□□□ -1.6
CCDC88A-210ENST00000468534 DDX4Q9NQI0 724 aaKnown RBP5.08□□□□□ -1.6
CCDC88A-210ENST00000468534 HOMER3Q9NSC5 361 aa5.08□□□□□ -1.6
CCDC88A-210ENST00000468534 UBAP1Q9NZ09 502 aa5.08□□□□□ -1.6
CCDC88A-210ENST00000468534 SRP68Q9UHB9 627 aaKnown RBP5.08□□□□□ -1.6
CCDC88A-210ENST00000468534 ZDHHC8Q9ULC8 765 aa5.08□□□□□ -1.6
CCDC88A-210ENST00000468534 RIMKLBQ9ULI2 386 aa5.08□□□□□ -1.6
CCDC88A-210ENST00000468534 TMEM5Q9Y2B1 443 aa5.08□□□□□ -1.6
CCDC88A-210ENST00000468534 BTBD3Q9Y2F9 522 aa5.08□□□□□ -1.6
CCDC88A-210ENST00000468534 CHTOPQ9Y3Y2 248 aaKnown RBP5.08□□□□□ -1.6
CCDC88A-210ENST00000468534 PCDHA1Q9Y5I3 950 aa5.08□□□□□ -1.6
CCDC88A-210ENST00000468534 SNX13Q9Y5W8 968 aa5.08□□□□□ -1.6
CCDC88A-210ENST00000468534 SPAG9O60271 1321 aaKnown RBP5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 ZSCAN5CA6NGD5 496 aaPredicted RBP5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 AGAP14A8MT82 685 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 TRIM38O00635 465 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 AP3D1O14617 1153 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 SLC16A3O15427 465 aaKnown RBP5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 DTNBO60941 627 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 BEST1O76090 585 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 YEATS4O95619 227 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 FESP07332 822 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 DLDP09622 509 aaKnown RBP5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 CSH1P0DML2 217 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 CSH2P0DML3 217 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 ACADMP11310 421 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 PSMA4P25789 261 aaKnown RBP5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 TLX1P31314 330 aaPredicted RBP5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 RFC1P35251 1148 aaPredicted RBP5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 ARHGAP25P42331 645 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 CPA2P48052 419 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 PEX5P50542 639 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 CCR5P51681 352 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 RAD23AP54725 363 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 CYP4F2P78329 520 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 EXOSC9Q06265 439 aaKnown RBP5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 IKQ13123 557 aaPredicted RBP5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 KYNUQ16719 465 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 TIGD6Q17RP2 521 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 SLC35G1Q2M3R5 365 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 THEMIS2Q5TEJ8 643 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 KLHDC7AQ5VTJ3 777 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 METTL11BQ5VVY1 283 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 FAM160B1Q5W0V3 765 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 MAEAQ7L5Y9 396 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 TRIM74Q86UV6 250 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 TRIM73Q86UV7 250 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 CHD1LQ86WJ1 897 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 COL23A1Q86Y22 540 aaPredicted RBP5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 CCDC65Q8IXS2 484 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 MAML2Q8IZL2 1156 aaPredicted RBP5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 KRT222Q8N1A0 295 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 LINS1Q8NG48 757 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 GRK7Q8WTQ7 553 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 TUBGCP3Q96CW5 907 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 APIPQ96GX9 242 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 EPSTI1Q96J88 318 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 TXN2Q99757 166 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 SH3GL1Q99961 368 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 SPXQ9BT56 116 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 COLEC11Q9BWP8 271 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 EHD1Q9H4M9 534 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 MED4Q9NPJ6 270 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 SERINC1Q9NRX5 453 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 DECR2Q9NUI1 292 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 LMBRD1Q9NUN5 540 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 PPP1R14DQ9NXH3 145 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 AATFQ9NY61 560 aaKnown RBP eCLIP5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 COQ3Q9NZJ6 369 aa5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 AKAP7Q9P0M2 348 aaPredicted RBP5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 HOOK1Q9UJC3 728 aaKnown RBP5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 CCNL1Q9UK58 526 aaPredicted RBP5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 AGO2Q9UKV8 859 aaKnown RBP5.07□□□□□ -1.6
CCDC88A-210ENST00000468534 MROH5Q6ZUA9 1318 aa5.06□□□□□ -1.6
CCDC88A-210ENST00000468534 TTC21BQ7Z4L5 1316 aa5.06□□□□□ -1.6
CCDC88A-210ENST00000468534 A0A0U1RQK1 487 aa5.06□□□□□ -1.6
CCDC88A-210ENST00000468534 ZNF320A2RRD8 509 aa5.06□□□□□ -1.6
CCDC88A-210ENST00000468534 KCNU1A8MYU2 1149 aa5.06□□□□□ -1.6
CCDC88A-210ENST00000468534 L7N2F9 121 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms