RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 ERVK-9P63128 1117 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 FOXR1Q6PIV2 292 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 GPRASP2Q96D09 838 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 POLD4Q9HCU8 107 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 KBTBD4Q9NVX7 518 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 GGA3Q9NZ52 723 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 ZC3H4Q9UPT8 1303 aaKnown RBP13.04□□□□□ -0.32
COL6A3-206ENST00000409809 PRKG2Q13237 762 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 PWP1Q13610 501 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 ZNF829Q3KNS6 432 aaPredicted RBP13.04□□□□□ -0.32
COL6A3-206ENST00000409809 TWF2Q6IBS0 349 aaKnown RBP13.04□□□□□ -0.32
COL6A3-206ENST00000409809 ROPN1LQ96C74 230 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 PFDN5Q99471 154 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 CHST12Q9NRB3 414 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 CATSPERZQ9NTU4 200 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 ARMCX1Q9P291 453 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 KCNIP3Q9Y2W7 256 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 FOSL2P15408 326 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 PSMD5Q16401 504 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 GRHL2Q6ISB3 625 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 GPAT2Q6NUI2 795 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 PABPC5Q96DU9 382 aaKnown RBP13.04□□□□□ -0.32
COL6A3-206ENST00000409809 SIK2Q9H0K1 926 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 CXorf21Q9HAI6 301 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 LGR6Q9HBX8 967 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 GSC2O15499 205 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 MAPTP10636 758 aaKnown RBP13.04□□□□□ -0.32
COL6A3-206ENST00000409809 ACTR3P61158 418 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 MAB21L1Q13394 359 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 LRRC38Q5VT99 294 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 CLNKQ7Z7G1 428 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 C10orf53Q8N6V4 93 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 OXER1Q8TDS5 423 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 TOP1MTQ969P6 601 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 CLPTM1LQ96KA5 538 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 PPP3R2Q96LZ3 170 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 RANBP3Q9H6Z4 567 aaPredicted RBP13.04□□□□□ -0.32
COL6A3-206ENST00000409809 ANKRA2Q9H9E1 313 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 A0A088AWK7 358 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 ZNF10P21506 573 aaPredicted RBP13.04□□□□□ -0.32
COL6A3-206ENST00000409809 RENBPP51606 427 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 XKR3Q5GH77 459 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 PAGE2Q7Z2X7 111 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 DENND2DQ9H6A0 471 aaPredicted RBP13.04□□□□□ -0.32
COL6A3-206ENST00000409809 GRIP1Q9Y3R0 1128 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 OMPP47874 163 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 CCR3P51677 355 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 SGO1Q5FBB7 561 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 RNF220Q5VTB9 566 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 TTI2Q6NXR4 508 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 UNKQ9C0B0 810 aaKnown RBP13.03□□□□□ -0.32
COL6A3-206ENST00000409809 FETUBQ9UGM5 382 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 H0YJX3 145 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 APOC4-APOC2K7ER74 178 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 SGTAO43765 313 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 APOC2P02655 101 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 ITGALP20701 1170 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 CYP2A7P20853 494 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 S100A3P33764 101 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 LIPMQ5VYY2 423 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 KIF12Q96FN5 646 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 HOXC10Q9NYD6 342 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 CHD4Q14839 1912 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 NFICP08651 508 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 LCP1P13796 627 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 HPGDP15428 266 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 PORP16435 677 aaPredicted RBP13.03□□□□□ -0.32
COL6A3-206ENST00000409809 RGS1Q08116 209 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 RBM48Q5RL73 367 aaKnown RBP13.03□□□□□ -0.32
COL6A3-206ENST00000409809 SULT1C3Q6IMI6 304 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 CYP2R1Q6VVX0 501 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 NECAB2Q7Z6G3 386 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 SEMA6AQ9H2E6 1030 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 GATBO75879 557 aaKnown RBP13.03□□□□□ -0.32
COL6A3-206ENST00000409809 ADORA2BP29275 332 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 ZBED5Q49AG3 693 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 ZRANB3Q5FWF4 1079 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 DEF8Q6ZN54 512 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 R3HCC1LQ7Z5L2 792 aaKnown RBP13.03□□□□□ -0.32
COL6A3-206ENST00000409809 PGAM4Q8N0Y7 254 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 TEX47Q8TBZ9 253 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 NXNL1Q96CM4 212 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 CENPNQ96H22 339 aaPredicted RBP13.03□□□□□ -0.32
COL6A3-206ENST00000409809 TPD52L3Q96J77 140 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 MTMR10Q9NXD2 777 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 RNASEH1O60930 286 aaKnown RBP13.03□□□□□ -0.32
COL6A3-206ENST00000409809 PGRP06401 933 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 UGT1A5P35504 534 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 EZH2Q15910 746 aaKnown RBP13.03□□□□□ -0.32
COL6A3-206ENST00000409809 AKIRIN2Q53H80 203 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 PGBD2Q6P3X8 592 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 ETNPPLQ8TBG4 499 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 DIRAS2Q96HU8 199 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 EXD2Q9NVH0 621 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 ZNF451Q9Y4E5 1061 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 VAPBO95292 243 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 ADRA2BP18089 450 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 RPL21P46778 160 aaKnown RBP13.03□□□□□ -0.32
COL6A3-206ENST00000409809 RAB5BP61020 215 aa13.03□□□□□ -0.32
COL6A3-206ENST00000409809 AP1S1P61966 158 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms