RNA–Protein interactions for RNA: ENST00000397099.1

SEC13-204, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 4

Gene SEC13, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-204ENST00000397099 DMTF1Q9Y222 760 aa14.24□□□□□ -0.13
SEC13-204ENST00000397099 PCNX2A6NKB5 2137 aa14.24□□□□□ -0.13
SEC13-204ENST00000397099 TBC1D3DA0A087WVF3 549 aa14.23□□□□□ -0.13
SEC13-204ENST00000397099 TBC1D3IA0A087WXS9 549 aa14.23□□□□□ -0.13
SEC13-204ENST00000397099 TBC1D3EA0A087X179 549 aa14.23□□□□□ -0.13
SEC13-204ENST00000397099 TBC1D3KA0A087X1G2 549 aa14.23□□□□□ -0.13
SEC13-204ENST00000397099 SPAARA0A1B0GVQ0 90 aa14.23□□□□□ -0.13
SEC13-204ENST00000397099 FAM170AA1A519 330 aa14.23□□□□□ -0.13
SEC13-204ENST00000397099 TBC1D3FA6NER0 549 aaPredicted RBP14.23□□□□□ -0.13
SEC13-204ENST00000397099 TMEM191CA6NGB0 347 aa14.23□□□□□ -0.13
SEC13-204ENST00000397099 FAM47DPA6NHR8 397 aa14.23□□□□□ -0.13
SEC13-204ENST00000397099 TMCO5BA8MYB1 307 aa14.23□□□□□ -0.13
SEC13-204ENST00000397099 C10orf142B7Z368 130 aa14.23□□□□□ -0.13
SEC13-204ENST00000397099 TBC1D3LB9A6J9 549 aa14.23□□□□□ -0.13
SEC13-204ENST00000397099 DDX3XO00571 662 aaKnown RBP eCLIP14.23□□□□□ -0.135e-9■■■□□ 15.5
SEC13-204ENST00000397099 LATO43561 262 aa14.23□□□□□ -0.13
SEC13-204ENST00000397099 SNAP91O60641 907 aa14.23□□□□□ -0.13
SEC13-204ENST00000397099 RNGTTO60942 597 aaKnown RBP14.23□□□□□ -0.13
SEC13-204ENST00000397099 ZMPSTE24O75844 475 aa14.23□□□□□ -0.13
SEC13-204ENST00000397099 GJB6O95452 261 aa14.23□□□□□ -0.13
SEC13-204ENST00000397099 MT-CO1P00395 513 aa14.23□□□□□ -0.13
SEC13-204ENST00000397099 IGHV4-34P06331 123 aa14.23□□□□□ -0.13
SEC13-204ENST00000397099 TBC1D3HP0C7X1 549 aa14.23□□□□□ -0.13
SEC13-204ENST00000397099 VAV1P15498 845 aa14.23□□□□□ -0.13
SEC13-204ENST00000397099 SPINK2P20155 84 aa14.23□□□□□ -0.13
SEC13-204ENST00000397099 SIM1P81133 766 aaPredicted RBP14.23□□□□□ -0.13
SEC13-204ENST00000397099 OVGP1Q12889 678 aa14.23□□□□□ -0.13
SEC13-204ENST00000397099 INO80DQ53TQ3 878 aaPredicted RBP14.23□□□□□ -0.13
SEC13-204ENST00000397099 TBC1D3GQ6DHY5 549 aa14.23□□□□□ -0.13
SEC13-204ENST00000397099 TBC1D3CQ6IPX1 549 aa14.23□□□□□ -0.13
SEC13-204ENST00000397099 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP14.23□□□□□ -0.13
SEC13-204ENST00000397099 PIP4P1Q86T03 277 aa14.23□□□□□ -0.13
SEC13-204ENST00000397099 TRIM69Q86WT6 500 aa14.23□□□□□ -0.13
SEC13-204ENST00000397099 TBC1D3Q8IZP1 549 aaPredicted RBP14.23□□□□□ -0.13
SEC13-204ENST00000397099 OR7D4Q8NG98 312 aa14.23□□□□□ -0.13
SEC13-204ENST00000397099 HDAC8Q9BY41 377 aa14.23□□□□□ -0.13
SEC13-204ENST00000397099 TAS2R14Q9NYV8 317 aa14.23□□□□□ -0.13
SEC13-204ENST00000397099 CNOT8Q9UFF9 292 aaKnown RBP14.23□□□□□ -0.13
SEC13-204ENST00000397099 SERGEFQ9UGK8 458 aa14.23□□□□□ -0.13
SEC13-204ENST00000397099 LCMT1Q9UIC8 334 aa14.23□□□□□ -0.13
SEC13-204ENST00000397099 VILLO15195 856 aa14.22□□□□□ -0.13
SEC13-204ENST00000397099 YKT6O15498 198 aa14.22□□□□□ -0.13
SEC13-204ENST00000397099 KDELR3O43731 214 aa14.22□□□□□ -0.13
SEC13-204ENST00000397099 PRPSAP2O60256 369 aa14.22□□□□□ -0.13
SEC13-204ENST00000397099 GJB3O75712 270 aa14.22□□□□□ -0.13
SEC13-204ENST00000397099 KRT37O76014 449 aa14.22□□□□□ -0.13
SEC13-204ENST00000397099 TRIM16O95361 564 aa14.22□□□□□ -0.13
SEC13-204ENST00000397099 GSRP00390 522 aa14.22□□□□□ -0.13
SEC13-204ENST00000397099 TPM1P09493 284 aa14.22□□□□□ -0.13
SEC13-204ENST00000397099 PCK1P35558 622 aa14.22□□□□□ -0.13
SEC13-204ENST00000397099 C21orf59P57076 290 aa14.22□□□□□ -0.13
SEC13-204ENST00000397099 SNRPD1P62314 119 aaKnown RBP14.22□□□□□ -0.13
SEC13-204ENST00000397099 RAD51Q06609 339 aa14.22□□□□□ -0.13
SEC13-204ENST00000397099 PIGHQ14442 188 aaPredicted RBP14.22□□□□□ -0.13
SEC13-204ENST00000397099 INAVAQ3KP66 663 aa14.22□□□□□ -0.13
SEC13-204ENST00000397099 SETMARQ53H47 684 aaPredicted RBP14.22□□□□□ -0.13
SEC13-204ENST00000397099 CARD16Q5EG05 197 aa14.22□□□□□ -0.13
SEC13-204ENST00000397099 ERMARDQ5T6L9 678 aa14.22□□□□□ -0.13
SEC13-204ENST00000397099 IQCHQ86VS3 1027 aa14.22□□□□□ -0.13
SEC13-204ENST00000397099 UMODL1-AS1Q8N2C9 162 aa14.22□□□□□ -0.13
SEC13-204ENST00000397099 OXR1Q8N573 874 aa14.22□□□□□ -0.13
SEC13-204ENST00000397099 FAM174AQ8TBP5 190 aa14.22□□□□□ -0.13
SEC13-204ENST00000397099 RAB7BQ96AH8 199 aa14.22□□□□□ -0.13
SEC13-204ENST00000397099 ZNF653Q96CK0 615 aa14.22□□□□□ -0.13
SEC13-204ENST00000397099 HEPHQ9BQS7 1158 aa14.22□□□□□ -0.13
SEC13-204ENST00000397099 OSBPL1AQ9BXW6 950 aa14.22□□□□□ -0.13
SEC13-204ENST00000397099 IFNKQ9P0W0 207 aa14.22□□□□□ -0.13
SEC13-204ENST00000397099 DNAI1Q9UI46 699 aa14.22□□□□□ -0.13
SEC13-204ENST00000397099 NEU3Q9UQ49 428 aa14.22□□□□□ -0.13
SEC13-204ENST00000397099 ANKRD6Q9Y2G4 727 aa14.22□□□□□ -0.13
SEC13-204ENST00000397099 ACACBO00763 2458 aa14.22□□□□□ -0.13
SEC13-204ENST00000397099 CHD8Q9HCK8 2581 aa14.21□□□□□ -0.13
SEC13-204ENST00000397099 FAM72CH0Y354 149 aa14.21□□□□□ -0.13
SEC13-204ENST00000397099 KPNA3O00505 521 aaPredicted RBP14.21□□□□□ -0.13
SEC13-204ENST00000397099 SMAD6O43541 496 aaKnown RBP14.21□□□□□ -0.13
SEC13-204ENST00000397099 CREB3O43889 395 aa14.21□□□□□ -0.13
SEC13-204ENST00000397099 BNIP3LO60238 219 aa14.21□□□□□ -0.13
SEC13-204ENST00000397099 TOP3BO95985 862 aaKnown RBP14.21□□□□□ -0.13
SEC13-204ENST00000397099 CD38P28907 300 aa14.21□□□□□ -0.13
SEC13-204ENST00000397099 HCAR3P49019 387 aa14.21□□□□□ -0.13
SEC13-204ENST00000397099 CSNK1EP49674 416 aaKnown RBP14.21□□□□□ -0.13
SEC13-204ENST00000397099 NDST2P52849 883 aa14.21□□□□□ -0.13
SEC13-204ENST00000397099 TPI1P60174 286 aa14.21□□□□□ -0.13
SEC13-204ENST00000397099 ARF5P84085 180 aa14.21□□□□□ -0.13
SEC13-204ENST00000397099 TSR1Q2NL82 804 aaKnown RBP14.21□□□□□ -0.13
SEC13-204ENST00000397099 HLA-BQ31612 363 aa14.21□□□□□ -0.13
SEC13-204ENST00000397099 RAB6CQ53S08 254 aa14.21□□□□□ -0.13
SEC13-204ENST00000397099 BOLA3Q53S33 107 aa14.21□□□□□ -0.13
SEC13-204ENST00000397099 FAM72AQ5TYM5 149 aa14.21□□□□□ -0.13
SEC13-204ENST00000397099 AGBL4Q5VU57 503 aa14.21□□□□□ -0.13
SEC13-204ENST00000397099 E4F1Q66K89 784 aaPredicted RBP14.21□□□□□ -0.13
SEC13-204ENST00000397099 HGSNATQ68CP4 663 aa14.21□□□□□ -0.13
SEC13-204ENST00000397099 FAM72DQ6L9T8 149 aa14.21□□□□□ -0.13
SEC13-204ENST00000397099 LINGO4Q6UY18 593 aa14.21□□□□□ -0.13
SEC13-204ENST00000397099 ERN2Q76MJ5 926 aaKnown RBP14.21□□□□□ -0.13
SEC13-204ENST00000397099 FAM72BQ86X60 149 aa14.21□□□□□ -0.13
SEC13-204ENST00000397099 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.21□□□□□ -0.13
SEC13-204ENST00000397099 RAB6CQ9H0N0 254 aa14.21□□□□□ -0.13
SEC13-204ENST00000397099 TSPY26PQ9H489 355 aa14.21□□□□□ -0.13
SEC13-204ENST00000397099 GAREM1Q9H706 876 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms