RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 LOC285556D6RIA3 1793 aa11.77□□□□□ -0.52
VPS4A-201ENST00000254950 DCTN3O75935 186 aa11.77□□□□□ -0.52
VPS4A-201ENST00000254950 GJB5O95377 273 aa11.77□□□□□ -0.52
VPS4A-201ENST00000254950 AP2A1O95782 977 aa11.77□□□□□ -0.52
VPS4A-201ENST00000254950 GFAPP14136 432 aa11.77□□□□□ -0.52
VPS4A-201ENST00000254950 HLA-DPA1P20036 260 aa11.77□□□□□ -0.52
VPS4A-201ENST00000254950 CHRM3P20309 590 aa11.77□□□□□ -0.52
VPS4A-201ENST00000254950 ADRA1DP25100 572 aa11.77□□□□□ -0.52
VPS4A-201ENST00000254950 RGS4P49798 205 aa11.77□□□□□ -0.52
VPS4A-201ENST00000254950 IL10RBQ08334 325 aa11.77□□□□□ -0.52
VPS4A-201ENST00000254950 RAB30Q15771 203 aa11.77□□□□□ -0.52
VPS4A-201ENST00000254950 FAM83EQ2M2I3 478 aa11.77□□□□□ -0.52
VPS4A-201ENST00000254950 GRTP1Q5TC63 336 aa11.77□□□□□ -0.52
VPS4A-201ENST00000254950 ZNF470Q6ECI4 717 aa11.77□□□□□ -0.52
VPS4A-201ENST00000254950 NEPROQ6NW34 567 aa11.77□□□□□ -0.52
VPS4A-201ENST00000254950 OTOP3Q7RTS5 596 aa11.77□□□□□ -0.52
VPS4A-201ENST00000254950 GLT6D1Q7Z4J2 308 aa11.77□□□□□ -0.52
VPS4A-201ENST00000254950 CXorf38Q8TB03 319 aa11.77□□□□□ -0.52
VPS4A-201ENST00000254950 CPNE1Q99829 537 aa11.77□□□□□ -0.52
VPS4A-201ENST00000254950 GTSE1Q9NYZ3 720 aa11.77□□□□□ -0.52
VPS4A-201ENST00000254950 IGSF9Q9P2J2 1179 aa11.77□□□□□ -0.52
VPS4A-201ENST00000254950 DCDC2Q9UHG0 476 aa11.77□□□□□ -0.52
VPS4A-201ENST00000254950 MOSPD1Q9UJG1 213 aa11.77□□□□□ -0.52
VPS4A-201ENST00000254950 DCTN4Q9UJW0 460 aa11.77□□□□□ -0.52
VPS4A-201ENST00000254950 TBX21Q9UL17 535 aa11.77□□□□□ -0.52
VPS4A-201ENST00000254950 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.77□□□□□ -0.53
VPS4A-201ENST00000254950 APOA4P06727 396 aa11.77□□□□□ -0.53
VPS4A-201ENST00000254950 PYGBP11216 843 aa11.77□□□□□ -0.53
VPS4A-201ENST00000254950 RPS24P62847 133 aaKnown RBP11.77□□□□□ -0.53
VPS4A-201ENST00000254950 DSG1Q02413 1049 aa11.77□□□□□ -0.53
VPS4A-201ENST00000254950 ILF2Q12905 390 aaKnown RBP11.77□□□□□ -0.53
VPS4A-201ENST00000254950 PAQR9Q6ZVX9 377 aa11.77□□□□□ -0.53
VPS4A-201ENST00000254950 SAMD11Q96NU1 681 aa11.77□□□□□ -0.53
VPS4A-201ENST00000254950 EGFL8Q99944 293 aa11.77□□□□□ -0.53
VPS4A-201ENST00000254950 SLC25A51Q9H1U9 297 aa11.77□□□□□ -0.53
VPS4A-201ENST00000254950 LRRC4CQ9HCJ2 640 aa11.77□□□□□ -0.53
VPS4A-201ENST00000254950 HACD3Q9P035 362 aa11.77□□□□□ -0.53
VPS4A-201ENST00000254950 HCSTQ9UBK5 93 aa11.77□□□□□ -0.53
VPS4A-201ENST00000254950 PCDHA11Q9Y5I1 949 aa11.77□□□□□ -0.53
VPS4A-201ENST00000254950 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.77□□□□□ -0.53
VPS4A-201ENST00000254950 FGF1P05230 155 aa11.77□□□□□ -0.53
VPS4A-201ENST00000254950 MYL2P10916 166 aa11.77□□□□□ -0.53
VPS4A-201ENST00000254950 HSPA8P11142 646 aaKnown RBP11.77□□□□□ -0.53
VPS4A-201ENST00000254950 BMPR1AP36894 532 aa11.77□□□□□ -0.53
VPS4A-201ENST00000254950 GBP7Q8N8V2 638 aaPredicted RBP11.77□□□□□ -0.53
VPS4A-201ENST00000254950 TSSK1BQ9BXA7 367 aa11.77□□□□□ -0.53
VPS4A-201ENST00000254950 MCOLN1Q9GZU1 580 aa11.77□□□□□ -0.53
VPS4A-201ENST00000254950 ZDHHC18Q9NUE0 388 aa11.77□□□□□ -0.53
VPS4A-201ENST00000254950 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.77□□□□□ -0.53
VPS4A-201ENST00000254950 ACOT9Q9Y305 439 aa11.77□□□□□ -0.53
VPS4A-201ENST00000254950 RNASEH1O60930 286 aaKnown RBP11.76□□□□□ -0.53
VPS4A-201ENST00000254950 SRP72O76094 671 aaKnown RBP11.76□□□□□ -0.53
VPS4A-201ENST00000254950 ERVK-10P10266 1014 aa11.76□□□□□ -0.53
VPS4A-201ENST00000254950 CTSAP10619 480 aa11.76□□□□□ -0.53
VPS4A-201ENST00000254950 STX1BP61266 288 aa11.76□□□□□ -0.53
VPS4A-201ENST00000254950 RING1Q06587 406 aa11.76□□□□□ -0.53
VPS4A-201ENST00000254950 SCAPQ12770 1279 aa11.76□□□□□ -0.53
VPS4A-201ENST00000254950 ATAT1Q5SQI0 421 aa11.76□□□□□ -0.53
VPS4A-201ENST00000254950 TTC9BQ8N6N2 239 aa11.76□□□□□ -0.53
VPS4A-201ENST00000254950 TCRBV9S1A1TA0A576 114 aa11.76□□□□□ -0.53
VPS4A-201ENST00000254950 ADH1CP00326 375 aa11.76□□□□□ -0.53
VPS4A-201ENST00000254950 EN2P19622 333 aaPredicted RBP11.76□□□□□ -0.53
VPS4A-201ENST00000254950 ARFIP2P53365 341 aa11.76□□□□□ -0.53
VPS4A-201ENST00000254950 SEC24CP53992 1094 aa11.76□□□□□ -0.53
VPS4A-201ENST00000254950 POLR2LP62875 67 aaKnown RBP11.76□□□□□ -0.53
VPS4A-201ENST00000254950 ING5Q8WYH8 240 aa11.76□□□□□ -0.53
VPS4A-201ENST00000254950 CENPIQ92674 756 aaPredicted RBP11.76□□□□□ -0.53
VPS4A-201ENST00000254950 PSMG2Q969U7 264 aa11.76□□□□□ -0.53
VPS4A-201ENST00000254950 ATP13A3Q9H7F0 1226 aa11.76□□□□□ -0.53
VPS4A-201ENST00000254950 MAN1C1Q9NR34 630 aa11.76□□□□□ -0.53
VPS4A-201ENST00000254950 LATS2Q9NRM7 1088 aa11.76□□□□□ -0.53
VPS4A-201ENST00000254950 SYBUQ9NX95 663 aa11.76□□□□□ -0.53
VPS4A-201ENST00000254950 CPSF2Q9P2I0 782 aaKnown RBP11.76□□□□□ -0.53
VPS4A-201ENST00000254950 TSR3Q9UJK0 312 aaKnown RBP11.76□□□□□ -0.53
VPS4A-201ENST00000254950 MAFFQ9ULX9 164 aa11.76□□□□□ -0.53
VPS4A-201ENST00000254950 RBBP6Q7Z6E9 1792 aaKnown RBP11.76□□□□□ -0.53
VPS4A-201ENST00000254950 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.76□□□□□ -0.53
VPS4A-201ENST00000254950 TBC1D3BA6NDS4 549 aa11.76□□□□□ -0.53
VPS4A-201ENST00000254950 NEDD8-MDP1E9PL57 170 aa11.76□□□□□ -0.53
VPS4A-201ENST00000254950 VPS26AO75436 327 aa11.76□□□□□ -0.53
VPS4A-201ENST00000254950 ASMTLO95671 621 aa11.76□□□□□ -0.53
VPS4A-201ENST00000254950 SYF2O95926 243 aaKnown RBP11.76□□□□□ -0.53
VPS4A-201ENST00000254950 DNAJC3Q13217 504 aa11.76□□□□□ -0.53
VPS4A-201ENST00000254950 SEMA5AQ13591 1074 aa11.76□□□□□ -0.53
VPS4A-201ENST00000254950 GTF2H3Q13889 308 aa11.76□□□□□ -0.53
VPS4A-201ENST00000254950 RCN2Q14257 317 aa11.76□□□□□ -0.53
VPS4A-201ENST00000254950 RAB6CQ53S08 254 aa11.76□□□□□ -0.53
VPS4A-201ENST00000254950 AGAP9Q5VTM2 703 aa11.76□□□□□ -0.53
VPS4A-201ENST00000254950 TMC5Q6UXY8 1006 aa11.76□□□□□ -0.53
VPS4A-201ENST00000254950 SPATA21Q7Z572 469 aa11.76□□□□□ -0.53
VPS4A-201ENST00000254950 MLPHQ9BV36 600 aaPredicted RBP11.76□□□□□ -0.53
VPS4A-201ENST00000254950 PHACTR1Q9C0D0 580 aa11.76□□□□□ -0.53
VPS4A-201ENST00000254950 RAB6CQ9H0N0 254 aa11.76□□□□□ -0.53
VPS4A-201ENST00000254950 PPARGC1AQ9UBK2 798 aaKnown RBP11.76□□□□□ -0.53
VPS4A-201ENST00000254950 CTNNAL1Q9UBT7 734 aa11.76□□□□□ -0.53
VPS4A-201ENST00000254950 TRMT6Q9UJA5 497 aaKnown RBP11.76□□□□□ -0.53
VPS4A-201ENST00000254950 APOBEC2Q9Y235 224 aaKnown RBP11.76□□□□□ -0.53
VPS4A-201ENST00000254950 GOLGA8TH3BQL2 631 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 METTL18O95568 372 aa11.75□□□□□ -0.53
VPS4A-201ENST00000254950 GJA1P17302 382 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms