RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 BHLHE22Q8NFJ8 381 aaPredicted RBP10.87□□□□□ -0.67
USP28-201ENST00000003302 NPLOC4Q8TAT6 608 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 PCED1BQ96HM7 432 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 B3GALT6Q96L58 329 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 GPR78Q96P69 363 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 VPS33BQ9H267 617 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 NYNRINQ9P2P1 1898 aaKnown RBP10.87□□□□□ -0.67
USP28-201ENST00000003302 SNUPNO95149 360 aaKnown RBP10.87□□□□□ -0.67
USP28-201ENST00000003302 PRSS56P0CW18 603 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 UQCRBP14927 111 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 CHRM3P20309 590 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 CES1P23141 567 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 ADRA1BP35368 520 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 ROR2Q01974 943 aaKnown RBP10.87□□□□□ -0.67
USP28-201ENST00000003302 DEUP1Q05D60 604 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 CNGA3Q16281 694 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 ZNF423Q2M1K9 1284 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 BNIPLQ7Z465 357 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 RNF217Q8TC41 542 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 DDIT4Q9NX09 232 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.87□□□□□ -0.67
USP28-201ENST00000003302 HSFX1Q9UBD0 423 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 ANGPTL2Q9UKU9 493 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 NUP214P35658 2090 aaPredicted RBP10.87□□□□□ -0.67
USP28-201ENST00000003302 TCAF2A6NFQ2 919 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 TARM1B6A8C7 271 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 GAS2O43903 313 aaKnown RBP10.87□□□□□ -0.67
USP28-201ENST00000003302 POLBP06746 335 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 HNRNPDQ14103 355 aaKnown RBP10.87□□□□□ -0.67
USP28-201ENST00000003302 IL23RQ5VWK5 629 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 CLEC6AQ6EIG7 209 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 SLC29A1Q99808 456 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 EVLQ9UI08 416 aaPredicted RBP10.87□□□□□ -0.67
USP28-201ENST00000003302 COPG1Q9Y678 874 aaKnown RBP10.87□□□□□ -0.67
USP28-201ENST00000003302 ITGB1P05556 798 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 CYP2B6P20813 491 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 ETFBP38117 255 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 ALDH1A3P47895 512 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 MAXP61244 160 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 SEMA3BQ13214 749 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 ZC3HC1Q86WB0 502 aaKnown RBP10.87□□□□□ -0.67
USP28-201ENST00000003302 IFNLR1Q8IU57 520 aaPredicted RBP10.87□□□□□ -0.67
USP28-201ENST00000003302 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.87□□□□□ -0.67
USP28-201ENST00000003302 ANKRD49Q8WVL7 239 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 GBP5Q96PP8 586 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 FLRT1Q9NZU1 646 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 PCDH10Q9P2E7 1040 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 RIMS3Q9UJD0 308 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 NEU3Q9UQ49 428 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 DYNC1LI2O43237 492 aaPredicted RBP10.86□□□□□ -0.67
USP28-201ENST00000003302 CRTAMO95727 393 aa10.86□□□□□ -0.67
USP28-201ENST00000003302 CLIC3O95833 236 aa10.86□□□□□ -0.67
USP28-201ENST00000003302 MMP3P08254 477 aa10.86□□□□□ -0.67
USP28-201ENST00000003302 MPP3Q13368 585 aa10.86□□□□□ -0.67
USP28-201ENST00000003302 PIM3Q86V86 326 aa10.86□□□□□ -0.67
USP28-201ENST00000003302 ANKRD27Q96NW4 1050 aa10.86□□□□□ -0.67
USP28-201ENST00000003302 OXSMQ9NWU1 459 aa10.86□□□□□ -0.67
USP28-201ENST00000003302 MPP6Q9NZW5 540 aa10.86□□□□□ -0.67
USP28-201ENST00000003302 ACTL7AQ9Y615 435 aa10.86□□□□□ -0.67
USP28-201ENST00000003302 UBFD1O14562 309 aaKnown RBP10.86□□□□□ -0.67
USP28-201ENST00000003302 AP2A1O95782 977 aa10.86□□□□□ -0.67
USP28-201ENST00000003302 APLP1P51693 650 aa10.86□□□□□ -0.67
USP28-201ENST00000003302 CLCNKBP51801 687 aa10.86□□□□□ -0.67
USP28-201ENST00000003302 CDH15P55291 814 aa10.86□□□□□ -0.67
USP28-201ENST00000003302 CBLBQ13191 982 aa10.86□□□□□ -0.67
USP28-201ENST00000003302 NADK2Q4G0N4 442 aa10.86□□□□□ -0.67
USP28-201ENST00000003302 SDHAF4Q5VUM1 108 aa10.86□□□□□ -0.67
USP28-201ENST00000003302 SLC27A1Q6PCB7 646 aa10.86□□□□□ -0.67
USP28-201ENST00000003302 AMIGO2Q86SJ2 522 aa10.86□□□□□ -0.67
USP28-201ENST00000003302 CRYBG2Q8N1P7 616 aa10.86□□□□□ -0.67
USP28-201ENST00000003302 RIN3Q8TB24 985 aa10.86□□□□□ -0.67
USP28-201ENST00000003302 PHF21BQ96EK2 531 aa10.86□□□□□ -0.67
USP28-201ENST00000003302 PRPF18Q99633 342 aaKnown RBP10.86□□□□□ -0.67
USP28-201ENST00000003302 OLFM1Q99784 485 aa10.86□□□□□ -0.67
USP28-201ENST00000003302 TRIM4Q9C037 500 aa10.86□□□□□ -0.67
USP28-201ENST00000003302 TKTL2Q9H0I9 626 aa10.86□□□□□ -0.67
USP28-201ENST00000003302 TXNDC16Q9P2K2 825 aa10.86□□□□□ -0.67
USP28-201ENST00000003302 RUVBL2Q9Y230 463 aaKnown RBP10.86□□□□□ -0.67
USP28-201ENST00000003302 CASTOR2A6NHX0 329 aa10.86□□□□□ -0.67
USP28-201ENST00000003302 PTPRRQ15256 657 aa10.86□□□□□ -0.67
USP28-201ENST00000003302 ZNF792Q3KQV3 632 aa10.86□□□□□ -0.67
USP28-201ENST00000003302 PIGGQ5H8A4 983 aa10.86□□□□□ -0.67
USP28-201ENST00000003302 DENND5AQ6IQ26 1287 aa10.86□□□□□ -0.67
USP28-201ENST00000003302 IPMKQ8NFU5 416 aa10.86□□□□□ -0.67
USP28-201ENST00000003302 PPTC7Q8NI37 304 aa10.86□□□□□ -0.67
USP28-201ENST00000003302 PIP4K2CQ8TBX8 421 aa10.86□□□□□ -0.67
USP28-201ENST00000003302 CHST12Q9NRB3 414 aa10.86□□□□□ -0.67
USP28-201ENST00000003302 DNAJC28Q9NX36 388 aa10.86□□□□□ -0.67
USP28-201ENST00000003302 KCTD3Q9Y597 815 aa10.86□□□□□ -0.67
USP28-201ENST00000003302 NR2C2P49116 596 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 GLUD2P49448 558 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 CSRP3P50461 194 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 TAS2R39P59534 338 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 CTBSQ01459 385 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 PCSK7Q16549 785 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 TMEM207Q6UWW9 146 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 ACAD11Q709F0 780 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 KDM1BQ8NB78 822 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 ZFP28Q8NHY6 868 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 C3orf30Q96M34 536 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms