RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 MLPHQ9BV36 600 aaPredicted RBP20.48■□□□□ 0.87
SYNGAP1-227ENST00000638142 TASP1Q9H6P5 420 aa20.48■□□□□ 0.87
SYNGAP1-227ENST00000638142 RNF19AQ9NV58 838 aa20.48■□□□□ 0.87
SYNGAP1-227ENST00000638142 TLK1Q9UKI8 766 aa20.48■□□□□ 0.87
SYNGAP1-227ENST00000638142 SMIM28A0A1B0GU29 152 aa20.47■□□□□ 0.87
SYNGAP1-227ENST00000638142 HUS1O60921 280 aa20.47■□□□□ 0.87
SYNGAP1-227ENST00000638142 GRIA4P48058 902 aa20.47■□□□□ 0.87
SYNGAP1-227ENST00000638142 TPI1P60174 286 aa20.47■□□□□ 0.87
SYNGAP1-227ENST00000638142 CDC42EP1Q00587 391 aa20.47■□□□□ 0.87
SYNGAP1-227ENST00000638142 HERC3Q15034 1050 aa20.47■□□□□ 0.87
SYNGAP1-227ENST00000638142 PCBP1Q15365 356 aaKnown RBP eCLIP20.47■□□□□ 0.874e-8■■■■□ 25.5
SYNGAP1-227ENST00000638142 ZNF385DQ9H6B1 395 aa20.47■□□□□ 0.87
SYNGAP1-227ENST00000638142 IARS2Q9NSE4 1012 aaKnown RBP20.47■□□□□ 0.87
SYNGAP1-227ENST00000638142 FAM72CH0Y354 149 aa20.47■□□□□ 0.87
SYNGAP1-227ENST00000638142 AP3B1O00203 1094 aa20.47■□□□□ 0.87
SYNGAP1-227ENST00000638142 F7P08709 466 aaPredicted RBP20.47■□□□□ 0.87
SYNGAP1-227ENST00000638142 CD68P34810 354 aaPredicted RBP20.47■□□□□ 0.87
SYNGAP1-227ENST00000638142 BAG6P46379 1132 aa20.47■□□□□ 0.87
SYNGAP1-227ENST00000638142 CLCN2P51788 898 aa20.47■□□□□ 0.87
SYNGAP1-227ENST00000638142 FLOT2Q14254 428 aa20.47■□□□□ 0.87
SYNGAP1-227ENST00000638142 PIGGQ5H8A4 983 aa20.47■□□□□ 0.87
SYNGAP1-227ENST00000638142 FAM72AQ5TYM5 149 aa20.47■□□□□ 0.87
SYNGAP1-227ENST00000638142 FAM72DQ6L9T8 149 aa20.47■□□□□ 0.87
SYNGAP1-227ENST00000638142 FAM72BQ86X60 149 aa20.47■□□□□ 0.87
SYNGAP1-227ENST00000638142 HDAC11Q96DB2 347 aa20.47■□□□□ 0.87
SYNGAP1-227ENST00000638142 VAT1Q99536 393 aa20.47■□□□□ 0.87
SYNGAP1-227ENST00000638142 C1QTNF1Q9BXJ1 281 aa20.47■□□□□ 0.87
SYNGAP1-227ENST00000638142 UBE2OQ9C0C9 1292 aaKnown RBP20.47■□□□□ 0.87
SYNGAP1-227ENST00000638142 SLC39A10Q9ULF5 831 aa20.47■□□□□ 0.87
SYNGAP1-227ENST00000638142 PDCD11Q14690 1871 aaKnown RBP20.46■□□□□ 0.87
SYNGAP1-227ENST00000638142 TSC2P49815 1807 aa20.46■□□□□ 0.87
SYNGAP1-227ENST00000638142 TK2O00142 265 aa20.46■□□□□ 0.87
SYNGAP1-227ENST00000638142 NEMP1O14524 444 aa20.46■□□□□ 0.87
SYNGAP1-227ENST00000638142 PIGNO95427 931 aa20.46■□□□□ 0.87
SYNGAP1-227ENST00000638142 TFEBP19484 476 aa20.46■□□□□ 0.87
SYNGAP1-227ENST00000638142 WARSP23381 471 aaKnown RBP20.46■□□□□ 0.87
SYNGAP1-227ENST00000638142 AKAP5P24588 427 aa20.46■□□□□ 0.87
SYNGAP1-227ENST00000638142 EPHA3P29320 983 aa20.46■□□□□ 0.87
SYNGAP1-227ENST00000638142 THOP1P52888 689 aa20.46■□□□□ 0.87
SYNGAP1-227ENST00000638142 ZNF423Q2M1K9 1284 aa20.46■□□□□ 0.87
SYNGAP1-227ENST00000638142 ARL13AQ5H913 290 aaPredicted RBP20.46■□□□□ 0.87
SYNGAP1-227ENST00000638142 PPM1LQ5SGD2 360 aa20.46■□□□□ 0.87
SYNGAP1-227ENST00000638142 PGAM4Q8N0Y7 254 aa20.46■□□□□ 0.87
SYNGAP1-227ENST00000638142 TMEM151AQ8N4L1 468 aa20.46■□□□□ 0.87
SYNGAP1-227ENST00000638142 ACVR1CQ8NER5 493 aa20.46■□□□□ 0.87
SYNGAP1-227ENST00000638142 LRGUKQ96M69 825 aa20.46■□□□□ 0.87
SYNGAP1-227ENST00000638142 TSPAN18Q96SJ8 248 aa20.46■□□□□ 0.87
SYNGAP1-227ENST00000638142 CDRT15Q96T59 188 aa20.46■□□□□ 0.87
SYNGAP1-227ENST00000638142 CHRAC1Q9NRG0 131 aa20.46■□□□□ 0.87
SYNGAP1-227ENST00000638142 RAB26Q9ULW5 256 aa20.46■□□□□ 0.87
SYNGAP1-227ENST00000638142 UNCXA6NJT0 531 aa20.46■□□□□ 0.87
SYNGAP1-227ENST00000638142 ADM5C9JUS6 153 aa20.46■□□□□ 0.87
SYNGAP1-227ENST00000638142 GRID2O43424 1007 aa20.46■□□□□ 0.87
SYNGAP1-227ENST00000638142 DNAJB1P25685 340 aa20.46■□□□□ 0.87
SYNGAP1-227ENST00000638142 ADCYAP1R1P41586 468 aa20.46■□□□□ 0.87
SYNGAP1-227ENST00000638142 NDUFV1P49821 464 aa20.46■□□□□ 0.87
SYNGAP1-227ENST00000638142 CCNA1P78396 465 aa20.46■□□□□ 0.87
SYNGAP1-227ENST00000638142 TMEM62Q0P6H9 643 aa20.46■□□□□ 0.87
SYNGAP1-227ENST00000638142 GRM3Q14832 879 aa20.46■□□□□ 0.87
SYNGAP1-227ENST00000638142 TLR1Q15399 786 aa20.46■□□□□ 0.87
SYNGAP1-227ENST00000638142 LRRC23Q53EV4 343 aaPredicted RBP20.46■□□□□ 0.87
SYNGAP1-227ENST00000638142 ANKRD13AQ8IZ07 590 aa20.46■□□□□ 0.87
SYNGAP1-227ENST00000638142 RHOJQ9H4E5 214 aa20.46■□□□□ 0.87
SYNGAP1-227ENST00000638142 ATXN10Q9UBB4 475 aa20.46■□□□□ 0.87
SYNGAP1-227ENST00000638142 CDYLQ9Y232 598 aa20.46■□□□□ 0.87
SYNGAP1-227ENST00000638142 GPR32O75388 356 aa20.45■□□□□ 0.86
SYNGAP1-227ENST00000638142 PENKP01210 267 aaPredicted RBP20.45■□□□□ 0.86
SYNGAP1-227ENST00000638142 ETS2P15036 469 aa20.45■□□□□ 0.86
SYNGAP1-227ENST00000638142 DNAJB2P25686 324 aa20.45■□□□□ 0.86
SYNGAP1-227ENST00000638142 PPIL2Q13356 520 aa20.45■□□□□ 0.86
SYNGAP1-227ENST00000638142 ADGRE1Q14246 886 aa20.45■□□□□ 0.86
SYNGAP1-227ENST00000638142 CNGA3Q16281 694 aa20.45■□□□□ 0.86
SYNGAP1-227ENST00000638142 ZNF792Q3KQV3 632 aa20.45■□□□□ 0.86
SYNGAP1-227ENST00000638142 PABPC1LQ4VXU2 614 aaKnown RBP20.45■□□□□ 0.86
SYNGAP1-227ENST00000638142 FASTKD5Q7L8L6 764 aaKnown RBP20.45■□□□□ 0.86
SYNGAP1-227ENST00000638142 SPATA24Q86W54 205 aa20.45■□□□□ 0.86
SYNGAP1-227ENST00000638142 ZC3HC1Q86WB0 502 aaKnown RBP20.45■□□□□ 0.86
SYNGAP1-227ENST00000638142 OSTM1Q86WC4 334 aa20.45■□□□□ 0.86
SYNGAP1-227ENST00000638142 SULF1Q8IWU6 871 aa20.45■□□□□ 0.86
SYNGAP1-227ENST00000638142 TOP6BLQ8N6T0 577 aa20.45■□□□□ 0.86
SYNGAP1-227ENST00000638142 RNF169Q8NCN4 708 aa20.45■□□□□ 0.86
SYNGAP1-227ENST00000638142 FAM81AQ8TBF8 368 aa20.45■□□□□ 0.86
SYNGAP1-227ENST00000638142 DLG3Q92796 817 aa20.45■□□□□ 0.86
SYNGAP1-227ENST00000638142 FAM49AQ9H0Q0 323 aaPredicted RBP20.45■□□□□ 0.86
SYNGAP1-227ENST00000638142 WDR6Q9NNW5 1121 aaKnown RBP20.45■□□□□ 0.86
SYNGAP1-227ENST00000638142 TADA2AO75478 443 aa20.45■□□□□ 0.86
SYNGAP1-227ENST00000638142 BEST1O76090 585 aa20.45■□□□□ 0.86
SYNGAP1-227ENST00000638142 DDHD2O94830 711 aa20.45■□□□□ 0.86
SYNGAP1-227ENST00000638142 SBK3P0C264 359 aa20.45■□□□□ 0.86
SYNGAP1-227ENST00000638142 KCNE1P15382 129 aa20.45■□□□□ 0.86
SYNGAP1-227ENST00000638142 NFKB1P19838 968 aa20.45■□□□□ 0.86
SYNGAP1-227ENST00000638142 ITGA7Q13683 1181 aa20.45■□□□□ 0.86
SYNGAP1-227ENST00000638142 HFE2Q6ZVN8 426 aa20.45■□□□□ 0.86
SYNGAP1-227ENST00000638142 NPWQ8N729 165 aa20.45■□□□□ 0.86
SYNGAP1-227ENST00000638142 STYXQ8WUJ0 223 aa20.45■□□□□ 0.86
SYNGAP1-227ENST00000638142 RCN3Q96D15 328 aa20.45■□□□□ 0.86
SYNGAP1-227ENST00000638142 NUF2Q9BZD4 464 aa20.45■□□□□ 0.86
SYNGAP1-227ENST00000638142 PACSIN3Q9UKS6 424 aa20.45■□□□□ 0.86
SYNGAP1-227ENST00000638142 NRCAMQ92823 1304 aa20.44■□□□□ 0.86
SYNGAP1-227ENST00000638142 RRN3P2A6NIE6 340 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms