RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 SLC38A10Q9HBR0 1119 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 ZBTB26Q9HCK0 441 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 AGO4Q9HCK5 861 aaKnown RBP11□□□□□ -0.65
UPF3A-212ENST00000619079 C8orf4Q9NR00 106 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 ASNSD1Q9NWL6 643 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 RBAKQ9NYW8 714 aaPredicted RBP11□□□□□ -0.65
UPF3A-212ENST00000619079 TMEM216Q9P0N5 145 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 RBPJLQ9UBG7 517 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 VTI1BQ9UEU0 232 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 PCSK1NQ9UHG2 260 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 AGO2Q9UKV8 859 aaKnown RBP11□□□□□ -0.65
UPF3A-212ENST00000619079 CCPG1Q9ULG6 757 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 AQP9O43315 295 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 AKAP10O43572 662 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 LDHAP00338 332 aaKnown RBP11□□□□□ -0.65
UPF3A-212ENST00000619079 PRKCGP05129 697 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 HSPA1AP0DMV8 641 aaKnown RBP11□□□□□ -0.65
UPF3A-212ENST00000619079 HSPA1BP0DMV9 641 aaKnown RBP11□□□□□ -0.65
UPF3A-212ENST00000619079 C7P10643 843 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 BMP2P12643 396 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 NFKBIAP25963 317 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 SFNP31947 248 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 PCYT1AP49585 367 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 AP3M2P53677 418 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 CDH6P55285 790 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 NIPAL4Q0D2K0 466 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 GRSF1Q12849 480 aaKnown RBP eCLIP11□□□□□ -0.65
UPF3A-212ENST00000619079 SLC10A2Q12908 348 aaPredicted RBP11□□□□□ -0.65
UPF3A-212ENST00000619079 MTX3Q5HYI7 312 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 GPR107Q5VW38 600 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 NPNTQ6UXI9 565 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 CAMK1DQ8IU85 385 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 CDKL3Q8IVW4 592 aaPredicted RBP11□□□□□ -0.65
UPF3A-212ENST00000619079 RNF148Q8N7C7 305 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 JOSD2Q8TAC2 188 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 PNPT1Q8TCS8 783 aaKnown RBP11□□□□□ -0.65
UPF3A-212ENST00000619079 SH2D3AQ9BRG2 576 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 TEX13BQ9BXU2 312 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 SPATC1LQ9H0A9 340 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 C20orf96Q9NUD7 363 aaPredicted RBP11□□□□□ -0.65
UPF3A-212ENST00000619079 ADA2Q9NZK5 511 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 ADAM28Q9UKQ2 775 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 RAP2CQ9Y3L5 183 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 KAT6AQ92794 2004 aa11□□□□□ -0.65
UPF3A-212ENST00000619079 C9IYK1 514 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 SPTLC1O15269 473 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 TRIM13O60858 407 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 PABPC1P11940 636 aaKnown RBP10.99□□□□□ -0.65
UPF3A-212ENST00000619079 PTPN2P17706 415 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 CCNA2P20248 432 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 GABRB3P28472 473 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 PRKAA2P54646 552 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 TMBIM6P55061 237 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 PSMC1P62191 440 aaKnown RBP10.99□□□□□ -0.65
UPF3A-212ENST00000619079 PRAMEP78395 509 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 BNIP3Q12983 259 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 RAB39AQ14964 217 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 LSM12Q3MHD2 195 aaKnown RBP10.99□□□□□ -0.65
UPF3A-212ENST00000619079 FGD3Q5JSP0 725 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 SCARA3Q6AZY7 606 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 SLFN12LQ6IEE8 588 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 C17orf99Q6UX52 265 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 HERC6Q8IVU3 1022 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 WDTC1Q8N5D0 677 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 MCPH1Q8NEM0 835 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 MAPK15Q8TD08 544 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 BSNDQ8WZ55 320 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 ATP6V0A1Q93050 837 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 CIB1Q99828 191 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 PSD2Q9BQI7 771 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 NAT9Q9BTE0 207 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 LHX5Q9H2C1 402 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 CD320Q9NPF0 282 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 RIC8BQ9NVN3 520 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 DUS2Q9NX74 493 aaKnown RBP10.99□□□□□ -0.65
UPF3A-212ENST00000619079 CDYLQ9Y232 598 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 STYXL1Q9Y6J8 313 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 THSD7BQ9C0I4 1608 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 PTPRJQ12913 1337 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 TCRBV3S1A0A5B6 114 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 KRBA1A5PL33 1030 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 TMEM150BA6NC51 233 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 PFDN6O15212 129 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 MED7O43513 233 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 FOXD2O60548 495 aaPredicted RBP10.99□□□□□ -0.65
UPF3A-212ENST00000619079 GCATO75600 419 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 CSPG5O95196 566 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 MLNP12872 115 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 GNL1P36915 607 aaPredicted RBP10.99□□□□□ -0.65
UPF3A-212ENST00000619079 DPP6P42658 865 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 RPL14P50914 215 aaKnown RBP10.99□□□□□ -0.65
UPF3A-212ENST00000619079 ATXN3P54252 364 aaPredicted RBP10.99□□□□□ -0.65
UPF3A-212ENST00000619079 SP3Q02447 781 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 GALNT2Q10471 571 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 PDK2Q15119 407 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 CYP2A13Q16696 494 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 UGCGQ16739 394 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 Q3C1V9 767 aa10.99□□□□□ -0.65
UPF3A-212ENST00000619079 INTS11Q5TA45 600 aaKnown RBP10.99□□□□□ -0.65
UPF3A-212ENST00000619079 ZNF534Q76KX8 674 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms