RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-222	ENST00000582792	HIC2	Q96JB3	615 aa		13.92	□□□□□ -0.18
SS18-222	ENST00000582792	RPRD1A	Q96P16	312 aa	Predicted RBP	13.92	□□□□□ -0.18
SS18-222	ENST00000582792	FAM204A	Q9H8W3	233 aa		13.92	□□□□□ -0.18
SS18-222	ENST00000582792	VPS28	Q9UK41	221 aa		13.92	□□□□□ -0.18
SS18-222	ENST00000582792	OR51B4	Q9Y5P0	310 aa		13.92	□□□□□ -0.18
SS18-222	ENST00000582792	ZNF559-ZNF177	A0A0A6YYI6	481 aa	Predicted RBP	13.91	□□□□□ -0.18
SS18-222	ENST00000582792		A0A1W2PQU0	124 aa		13.91	□□□□□ -0.18
SS18-222	ENST00000582792	SLC31A1	O15431	190 aa		13.91	□□□□□ -0.18
SS18-222	ENST00000582792	FFAR2	O15552	330 aa		13.91	□□□□□ -0.18
SS18-222	ENST00000582792	OPA1	O60313	960 aa		13.91	□□□□□ -0.18
SS18-222	ENST00000582792	PIAS2	O75928	621 aa		13.91	□□□□□ -0.18
SS18-222	ENST00000582792	DXO	O77932	396 aa	Known RBP	13.91	□□□□□ -0.18
SS18-222	ENST00000582792	MPO	P05164	745 aa		13.91	□□□□□ -0.18
SS18-222	ENST00000582792	CTSL	P07711	333 aa		13.91	□□□□□ -0.18
SS18-222	ENST00000582792	PRLR	P16471	622 aa		13.91	□□□□□ -0.18
SS18-222	ENST00000582792	IRAK1	P51617	712 aa		13.91	□□□□□ -0.18
SS18-222	ENST00000582792	UCN	P55089	124 aa		13.91	□□□□□ -0.18
SS18-222	ENST00000582792	MARS	P56192	900 aa	Known RBP	13.91	□□□□□ -0.18
SS18-222	ENST00000582792	ZNF177	Q13360	481 aa	Predicted RBP	13.91	□□□□□ -0.18
SS18-222	ENST00000582792	AUH	Q13825	339 aa	Known RBP	13.91	□□□□□ -0.18
SS18-222	ENST00000582792	ZNF284	Q2VY69	593 aa		13.91	□□□□□ -0.18
SS18-222	ENST00000582792	TMC6	Q7Z403	805 aa		13.91	□□□□□ -0.18
SS18-222	ENST00000582792	LSMEM2	Q8N112	164 aa		13.91	□□□□□ -0.18
SS18-222	ENST00000582792	ENOX1	Q8TC92	643 aa	Known RBP	13.91	□□□□□ -0.18
SS18-222	ENST00000582792	ZNF606	Q8WXB4	792 aa		13.91	□□□□□ -0.18
SS18-222	ENST00000582792	KLK6	Q92876	244 aa		13.91	□□□□□ -0.18
SS18-222	ENST00000582792	RNF34	Q969K3	372 aa		13.91	□□□□□ -0.18
SS18-222	ENST00000582792	DEPDC7	Q96QD5	511 aa		13.91	□□□□□ -0.18
SS18-222	ENST00000582792	SLC2A13	Q96QE2	648 aa		13.91	□□□□□ -0.18
SS18-222	ENST00000582792	MYOC	Q99972	504 aa		13.91	□□□□□ -0.18
SS18-222	ENST00000582792	DDIT4	Q9NX09	232 aa		13.91	□□□□□ -0.18
SS18-222	ENST00000582792	HS3ST2	Q9Y278	367 aa		13.91	□□□□□ -0.18
SS18-222	ENST00000582792	SYNJ2BP-COX16	A0A087WUM0	186 aa		13.9	□□□□□ -0.18
SS18-222	ENST00000582792	BNIP3L	O60238	219 aa		13.9	□□□□□ -0.18
SS18-222	ENST00000582792	CLDN11	O75508	207 aa		13.9	□□□□□ -0.18
SS18-222	ENST00000582792	GP1BA	P07359	652 aa		13.9	□□□□□ -0.18
SS18-222	ENST00000582792	GLI1	P08151	1106 aa		13.9	□□□□□ -0.18
SS18-222	ENST00000582792	ALPPL2	P10696	532 aa		13.9	□□□□□ -0.18
SS18-222	ENST00000582792	SRC	P12931	536 aa		13.9	□□□□□ -0.18
SS18-222	ENST00000582792	PRKCSH	P14314	528 aa	Predicted RBP	13.9	□□□□□ -0.18
SS18-222	ENST00000582792	HNRNPA2B1	P22626	353 aa	Known RBP	13.9	□□□□□ -0.18
SS18-222	ENST00000582792	AKT2	P31751	481 aa		13.9	□□□□□ -0.18
SS18-222	ENST00000582792	TMPRSS3	P57727	454 aa		13.9	□□□□□ -0.18
SS18-222	ENST00000582792	ERVPABLB-1	P60509	514 aa		13.9	□□□□□ -0.18
SS18-222	ENST00000582792	GABRE	P78334	506 aa		13.9	□□□□□ -0.18
SS18-222	ENST00000582792	RHD	Q02161	417 aa		13.9	□□□□□ -0.18
SS18-222	ENST00000582792	TYRO3	Q06418	890 aa		13.9	□□□□□ -0.18
SS18-222	ENST00000582792	CCDC15	Q0P6D6	951 aa		13.9	□□□□□ -0.18
SS18-222	ENST00000582792	MTA1	Q13330	715 aa		13.9	□□□□□ -0.18
SS18-222	ENST00000582792	PDCL	Q13371	301 aa		13.9	□□□□□ -0.18
SS18-222	ENST00000582792	BROX	Q5VW32	411 aa		13.9	□□□□□ -0.18
SS18-222	ENST00000582792	HORMAD1	Q86X24	394 aa		13.9	□□□□□ -0.18
SS18-222	ENST00000582792	DEFB106A	Q8N104	65 aa		13.9	□□□□□ -0.18
SS18-222	ENST00000582792	OR13H1	Q8NG92	308 aa		13.9	□□□□□ -0.18
SS18-222	ENST00000582792	IFT43	Q96FT9	208 aa		13.9	□□□□□ -0.18
SS18-222	ENST00000582792	WBP1	Q96G27	269 aa		13.9	□□□□□ -0.18
SS18-222	ENST00000582792	NAF1	Q96HR8	494 aa	Known RBP	13.9	□□□□□ -0.18
SS18-222	ENST00000582792	CALN1	Q9BXU9	219 aa		13.9	□□□□□ -0.18
SS18-222	ENST00000582792	INTS2	Q9H0H0	1204 aa	Known RBP	13.9	□□□□□ -0.18
SS18-222	ENST00000582792	FZD3	Q9NPG1	666 aa		13.9	□□□□□ -0.18
SS18-222	ENST00000582792	ASNSD1	Q9NWL6	643 aa		13.9	□□□□□ -0.18
SS18-222	ENST00000582792	NLGN3	Q9NZ94	848 aa		13.9	□□□□□ -0.18
SS18-222	ENST00000582792	COX16	Q9P0S2	106 aa		13.9	□□□□□ -0.18
SS18-222	ENST00000582792	VANGL2	Q9ULK5	521 aa		13.9	□□□□□ -0.18
SS18-222	ENST00000582792	TBC1D30	Q9Y2I9	924 aa		13.9	□□□□□ -0.18
SS18-222	ENST00000582792	FARP1	Q9Y4F1	1045 aa	Predicted RBP	13.9	□□□□□ -0.18
SS18-222	ENST00000582792	HS3ST4	Q9Y661	456 aa		13.9	□□□□□ -0.18
SS18-222	ENST00000582792	MAST4	O15021	2626 aa		13.9	□□□□□ -0.18
SS18-222	ENST00000582792	TDRD6	O60522	2096 aa	Known RBP	13.89	□□□□□ -0.19
SS18-222	ENST00000582792	LY6G6E	A0A0G2JKS1	128 aa		13.89	□□□□□ -0.19
SS18-222	ENST00000582792	KPNA3	O00505	521 aa	Predicted RBP	13.89	□□□□□ -0.19
SS18-222	ENST00000582792	THAP12	O43422	761 aa		13.89	□□□□□ -0.19
SS18-222	ENST00000582792	USP12	O75317	370 aa		13.89	□□□□□ -0.19
SS18-222	ENST00000582792	MT-CO1	P00395	513 aa		13.89	□□□□□ -0.19
SS18-222	ENST00000582792	GNA15	P30679	374 aa		13.89	□□□□□ -0.19
SS18-222	ENST00000582792	CHRNA3	P32297	505 aa		13.89	□□□□□ -0.19
SS18-222	ENST00000582792	LSS	P48449	732 aa		13.89	□□□□□ -0.19
SS18-222	ENST00000582792	STX17	P56962	302 aa		13.89	□□□□□ -0.19
SS18-222	ENST00000582792	C5orf22	Q49AR2	442 aa		13.89	□□□□□ -0.19
SS18-222	ENST00000582792	TAF1B	Q53T94	588 aa	Predicted RBP	13.89	□□□□□ -0.19
SS18-222	ENST00000582792	EFHC1	Q5JVL4	640 aa		13.89	□□□□□ -0.19
SS18-222	ENST00000582792	GCNT7	Q6ZNI0	430 aa		13.89	□□□□□ -0.19
SS18-222	ENST00000582792	ABI3BP	Q7Z7G0	1075 aa		13.89	□□□□□ -0.19
SS18-222	ENST00000582792	TRIM59	Q8IWR1	403 aa		13.89	□□□□□ -0.19
SS18-222	ENST00000582792	SLC22A18AS	Q8N1D0	253 aa		13.89	□□□□□ -0.19
SS18-222	ENST00000582792	FAM181A	Q8N9Y4	354 aa		13.89	□□□□□ -0.19
SS18-222	ENST00000582792	ATP11C	Q8NB49	1132 aa		13.89	□□□□□ -0.19
SS18-222	ENST00000582792	TMIE	Q8NEW7	156 aa		13.89	□□□□□ -0.19
SS18-222	ENST00000582792	OR2A12	Q8NGT7	310 aa		13.89	□□□□□ -0.19
SS18-222	ENST00000582792	FAM174A	Q8TBP5	190 aa		13.89	□□□□□ -0.19
SS18-222	ENST00000582792	ARRDC3	Q96B67	414 aa		13.89	□□□□□ -0.19
SS18-222	ENST00000582792	APOLD1	Q96LR9	279 aa		13.89	□□□□□ -0.19
SS18-222	ENST00000582792	CCDC114	Q96M63	670 aa		13.89	□□□□□ -0.19
SS18-222	ENST00000582792	NOX5	Q96PH1	765 aa		13.89	□□□□□ -0.19
SS18-222	ENST00000582792	BPIFA3	Q9BQP9	254 aa		13.89	□□□□□ -0.19
SS18-222	ENST00000582792	FUCA2	Q9BTY2	467 aa		13.89	□□□□□ -0.19
SS18-222	ENST00000582792	SRRT	Q9BXP5	876 aa	Known RBP	13.89	□□□□□ -0.19
SS18-222	ENST00000582792	MUC3B	Q9H195	1237 aa		13.89	□□□□□ -0.19
SS18-222	ENST00000582792	CAAP1	Q9H8G2	361 aa		13.89	□□□□□ -0.19
SS18-222	ENST00000582792	POLR1B	Q9H9Y6	1135 aa		13.89	□□□□□ -0.19

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