RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 KLF10Q13118 480 aa23.18■■□□□ 1.3
VPS53-211ENST00000571805 CFAP157Q5JU67 520 aa23.18■■□□□ 1.3
VPS53-211ENST00000571805 NAPEPLDQ6IQ20 393 aa23.18■■□□□ 1.3
VPS53-211ENST00000571805 TAC4Q86UU9 113 aa23.18■■□□□ 1.3
VPS53-211ENST00000571805 ZC3HC1Q86WB0 502 aaKnown RBP23.18■■□□□ 1.3
VPS53-211ENST00000571805 MOCOSQ96EN8 888 aa23.18■■□□□ 1.3
VPS53-211ENST00000571805 TSGA13Q96PP4 275 aa23.18■■□□□ 1.3
VPS53-211ENST00000571805 OR52B2Q96RD2 323 aa23.18■■□□□ 1.3
VPS53-211ENST00000571805 VCXQ9H320 206 aa23.18■■□□□ 1.3
VPS53-211ENST00000571805 FAM105AQ9NUU6 356 aa23.18■■□□□ 1.3
VPS53-211ENST00000571805 DSG1Q02413 1049 aa23.18■■□□□ 1.3
VPS53-211ENST00000571805 ANO4Q32M45 955 aa23.18■■□□□ 1.3
VPS53-211ENST00000571805 DEFB107AQ8IZN7 70 aa23.18■■□□□ 1.3
VPS53-211ENST00000571805 SREK1Q8WXA9 508 aaKnown RBP23.18■■□□□ 1.3
VPS53-211ENST00000571805 PYDC1Q8WXC3 89 aa23.18■■□□□ 1.3
VPS53-211ENST00000571805 APBA2Q99767 749 aa23.18■■□□□ 1.3
VPS53-211ENST00000571805 RTP3Q9BQQ7 232 aa23.18■■□□□ 1.3
VPS53-211ENST00000571805 ACE2Q9BYF1 805 aaPredicted RBP23.18■■□□□ 1.3
VPS53-211ENST00000571805 CYP4F11Q9HBI6 524 aa23.18■■□□□ 1.3
VPS53-211ENST00000571805 GRIK3Q13003 919 aa23.17■■□□□ 1.3
VPS53-211ENST00000571805 PRPSAP1Q14558 356 aa23.17■■□□□ 1.3
VPS53-211ENST00000571805 GSTA3Q16772 222 aa23.17■■□□□ 1.3
VPS53-211ENST00000571805 IRGQQ8WZA9 623 aa23.17■■□□□ 1.3
VPS53-211ENST00000571805 LPPQ93052 612 aa23.17■■□□□ 1.3
VPS53-211ENST00000571805 SCOCQ9UIL1 159 aa23.17■■□□□ 1.3
VPS53-211ENST00000571805 NEU3Q9UQ49 428 aa23.17■■□□□ 1.3
VPS53-211ENST00000571805 ANKRD6Q9Y2G4 727 aa23.17■■□□□ 1.3
VPS53-211ENST00000571805 FNDC1Q4ZHG4 1894 aaPredicted RBP23.17■■□□□ 1.3
VPS53-211ENST00000571805 AP3B1O00203 1094 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 ZMPSTE24O75844 475 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 APOA4P06727 396 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 CHRNGP07510 517 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 GNAT1P11488 350 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 GABRB3P28472 473 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 CUL3Q13618 768 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 CCL14Q16627 93 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 ZYG11AQ6WRX3 759 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 PAAF1Q9BRP4 392 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 YIPF3Q9GZM5 350 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 ILKAPQ9H0C8 392 aaPredicted RBP23.16■■□□□ 1.3
VPS53-211ENST00000571805 RHOJQ9H4E5 214 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 POMPQ9Y244 141 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 MAGEA13PA6NCF6 341 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 TK2O00142 265 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 MATN2O00339 956 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 DNAJB2P25686 324 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 CCNHP51946 323 aaPredicted RBP23.16■■□□□ 1.3
VPS53-211ENST00000571805 PGGT1BP53609 377 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 ZNF33AQ06730 810 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 CDC16Q13042 620 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 ARHGAP36Q6ZRI8 547 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 RAPH1Q70E73 1250 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 LINC00523Q86TU6 105 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 RDH11Q8TC12 318 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 AGR3Q8TD06 166 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 USP33Q8TEY7 942 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 MYLPFQ96A32 169 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 IFT43Q96FT9 208 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 NR1H4Q96RI1 486 aaPredicted RBP23.16■■□□□ 1.3
VPS53-211ENST00000571805 RTKNQ9BST9 563 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 KATNAL1Q9BW62 490 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 DRC3Q9H069 523 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 AP5M1Q9H0R1 490 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 OSBPL2Q9H1P3 480 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 TASP1Q9H6P5 420 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 NSMCE4AQ9NXX6 385 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 CPA4Q9UI42 421 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 MID2Q9UJV3 735 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 ARHGAP26Q9UNA1 814 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 ST3GAL5Q9UNP4 418 aa23.16■■□□□ 1.3
VPS53-211ENST00000571805 CCDC78A2IDD5 438 aa23.15■■□□□ 1.3
VPS53-211ENST00000571805 PSMD3O43242 534 aa23.15■■□□□ 1.3
VPS53-211ENST00000571805 TIGD5Q53EQ6 642 aa23.15■■□□□ 1.3
VPS53-211ENST00000571805 SPRYD7Q5W111 196 aa23.15■■□□□ 1.3
VPS53-211ENST00000571805 HPS6Q86YV9 775 aa23.15■■□□□ 1.3
VPS53-211ENST00000571805 FBXW8Q8N3Y1 598 aa23.15■■□□□ 1.3
VPS53-211ENST00000571805 SPATA22Q8NHS9 363 aa23.15■■□□□ 1.3
VPS53-211ENST00000571805 TCF7L2Q9NQB0 619 aa23.15■■□□□ 1.3
VPS53-211ENST00000571805 TLK1Q9UKI8 766 aa23.15■■□□□ 1.3
VPS53-211ENST00000571805 RAP2CQ9Y3L5 183 aa23.15■■□□□ 1.3
VPS53-211ENST00000571805 ASB3Q9Y575 518 aa23.15■■□□□ 1.3
VPS53-211ENST00000571805 MAP3K13O43283 966 aa23.15■■□□□ 1.3
VPS53-211ENST00000571805 AHSGP02765 367 aa23.15■■□□□ 1.3
VPS53-211ENST00000571805 CD1EP15812 388 aa23.15■■□□□ 1.3
VPS53-211ENST00000571805 MPSTP25325 297 aa23.15■■□□□ 1.3
VPS53-211ENST00000571805 MRPS6P82932 125 aaKnown RBP23.15■■□□□ 1.3
VPS53-211ENST00000571805 PURAQ00577 322 aaKnown RBP23.15■■□□□ 1.3
VPS53-211ENST00000571805 LIPMQ5VYY2 423 aa23.15■■□□□ 1.3
VPS53-211ENST00000571805 DHDDSQ86SQ9 333 aa23.15■■□□□ 1.3
VPS53-211ENST00000571805 DQX1Q8TE96 717 aaKnown RBP23.15■■□□□ 1.3
VPS53-211ENST00000571805 ZNF419Q96HQ0 510 aaPredicted RBP23.15■■□□□ 1.3
VPS53-211ENST00000571805 LENG8Q96PV6 779 aaPredicted RBP23.15■■□□□ 1.3
VPS53-211ENST00000571805 ACSS2Q9NR19 701 aa23.15■■□□□ 1.3
VPS53-211ENST00000571805 SCN4AP35499 1836 aa23.14■■□□□ 1.3
VPS53-211ENST00000571805 ARL5CA6NH57 179 aa23.14■■□□□ 1.3
VPS53-211ENST00000571805 PHGDHO43175 533 aaKnown RBP23.14■■□□□ 1.3
VPS53-211ENST00000571805 SLC35E2BP0CK96 405 aa23.14■■□□□ 1.3
VPS53-211ENST00000571805 PCSK1P29120 753 aa23.14■■□□□ 1.3
VPS53-211ENST00000571805 CCR10P46092 362 aa23.14■■□□□ 1.3
VPS53-211ENST00000571805 GRIA4P48058 902 aa23.14■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms