RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 BNIP3LO60238 219 aa11.93□□□□□ -0.5
CLSTN3-209ENST00000539982 TCEA3O75764 348 aa11.93□□□□□ -0.5
CLSTN3-209ENST00000539982 TNFSF15O95150 251 aa11.93□□□□□ -0.5
CLSTN3-209ENST00000539982 CSF2P04141 144 aa11.93□□□□□ -0.5
CLSTN3-209ENST00000539982 RPL34P49207 117 aaKnown RBP11.93□□□□□ -0.5
CLSTN3-209ENST00000539982 DPYDQ12882 1025 aa11.93□□□□□ -0.5
CLSTN3-209ENST00000539982 EIF4EBP2Q13542 120 aaPredicted RBP11.93□□□□□ -0.5
CLSTN3-209ENST00000539982 ZSCAN23Q3MJ62 389 aa11.93□□□□□ -0.5
CLSTN3-209ENST00000539982 LINC00303Q3SY05 128 aa11.93□□□□□ -0.5
CLSTN3-209ENST00000539982 DCAF17Q5H9S7 520 aaPredicted RBP11.93□□□□□ -0.5
CLSTN3-209ENST00000539982 COLEC12Q5KU26 742 aa11.93□□□□□ -0.5
CLSTN3-209ENST00000539982 RABGAP1LQ5R372 815 aa11.93□□□□□ -0.5
CLSTN3-209ENST00000539982 TCERG1LQ5VWI1 586 aa11.93□□□□□ -0.5
CLSTN3-209ENST00000539982 EFL1Q7Z2Z2 1120 aaKnown RBP11.93□□□□□ -0.5
CLSTN3-209ENST00000539982 CLEC14AQ86T13 490 aa11.93□□□□□ -0.5
CLSTN3-209ENST00000539982 CIR1Q86X95 450 aaPredicted RBP11.93□□□□□ -0.5
CLSTN3-209ENST00000539982 SH2D3CQ8N5H7 860 aa11.93□□□□□ -0.5
CLSTN3-209ENST00000539982 TMIEQ8NEW7 156 aa11.93□□□□□ -0.5
CLSTN3-209ENST00000539982 WDR36Q8NI36 951 aaKnown RBP11.93□□□□□ -0.5
CLSTN3-209ENST00000539982 RNF34Q969K3 372 aa11.93□□□□□ -0.5
CLSTN3-209ENST00000539982 ARRDC3Q96B67 414 aa11.93□□□□□ -0.5
CLSTN3-209ENST00000539982 BMFQ96LC9 184 aa11.93□□□□□ -0.5
CLSTN3-209ENST00000539982 TRIM62Q9BVG3 475 aa11.93□□□□□ -0.5
CLSTN3-209ENST00000539982 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.93□□□□□ -0.5
CLSTN3-209ENST00000539982 ZFR2Q9UPR6 939 aaKnown RBP11.93□□□□□ -0.5
CLSTN3-209ENST00000539982 HPSEQ9Y251 543 aa11.93□□□□□ -0.5
CLSTN3-209ENST00000539982 PCDHB4Q9Y5E5 795 aa11.93□□□□□ -0.5
CLSTN3-209ENST00000539982 SPTY2D1-AS1A0A0U1RR47 76 aa11.92□□□□□ -0.5
CLSTN3-209ENST00000539982 K7ELQ4 463 aaPredicted RBP11.92□□□□□ -0.5
CLSTN3-209ENST00000539982 KPNA3O00505 521 aaPredicted RBP11.92□□□□□ -0.5
CLSTN3-209ENST00000539982 TERTO14746 1132 aaKnown RBP11.92□□□□□ -0.5
CLSTN3-209ENST00000539982 TPP1O14773 563 aa11.92□□□□□ -0.5
CLSTN3-209ENST00000539982 PCDH8O95206 1070 aa11.92□□□□□ -0.5
CLSTN3-209ENST00000539982 TRUB2O95900 331 aaKnown RBP11.92□□□□□ -0.5
CLSTN3-209ENST00000539982 F13A1P00488 732 aa11.92□□□□□ -0.5
CLSTN3-209ENST00000539982 IGLV3-25P01717 112 aa11.92□□□□□ -0.5
CLSTN3-209ENST00000539982 CTSLP07711 333 aa11.92□□□□□ -0.5
CLSTN3-209ENST00000539982 PRR29P0C7W0 189 aa11.92□□□□□ -0.5
CLSTN3-209ENST00000539982 ZSCAN22P10073 491 aaPredicted RBP11.92□□□□□ -0.5
CLSTN3-209ENST00000539982 NME1P15531 152 aaKnown RBP11.92□□□□□ -0.5
CLSTN3-209ENST00000539982 BRD2P25440 801 aaKnown RBP11.92□□□□□ -0.5
CLSTN3-209ENST00000539982 CHRNA3P32297 505 aa11.92□□□□□ -0.5
CLSTN3-209ENST00000539982 GPD2P43304 727 aa11.92□□□□□ -0.5
CLSTN3-209ENST00000539982 ACADSBP45954 432 aa11.92□□□□□ -0.5
CLSTN3-209ENST00000539982 FZD2Q14332 565 aa11.92□□□□□ -0.5
CLSTN3-209ENST00000539982 FBXL22Q6P050 247 aa11.92□□□□□ -0.5
CLSTN3-209ENST00000539982 GUSBP11Q6P575 273 aa11.92□□□□□ -0.5
CLSTN3-209ENST00000539982 FOXR1Q6PIV2 292 aa11.92□□□□□ -0.5
CLSTN3-209ENST00000539982 ATG14Q6ZNE5 492 aa11.92□□□□□ -0.5
CLSTN3-209ENST00000539982 ZNF548Q8NEK5 533 aaPredicted RBP11.92□□□□□ -0.5
CLSTN3-209ENST00000539982 TRIM4Q9C037 500 aa11.92□□□□□ -0.5
CLSTN3-209ENST00000539982 DYRK4Q9NR20 520 aa11.92□□□□□ -0.5
CLSTN3-209ENST00000539982 GPR27Q9NS67 375 aa11.92□□□□□ -0.5
CLSTN3-209ENST00000539982 STARD5Q9NSY2 213 aa11.92□□□□□ -0.5
CLSTN3-209ENST00000539982 VPS28Q9UK41 221 aa11.92□□□□□ -0.5
CLSTN3-209ENST00000539982 ATXN7L1Q9ULK2 861 aaPredicted RBP11.92□□□□□ -0.5
CLSTN3-209ENST00000539982 OR51B4Q9Y5P0 310 aa11.92□□□□□ -0.5
CLSTN3-209ENST00000539982 COL12A1Q99715 3063 aa11.92□□□□□ -0.5
CLSTN3-209ENST00000539982 COL27A1Q8IZC6 1860 aaPredicted RBP11.91□□□□□ -0.5
CLSTN3-209ENST00000539982 PMS2P1A4D2B8 440 aa11.91□□□□□ -0.5
CLSTN3-209ENST00000539982 POM121BA6NF01 834 aa11.91□□□□□ -0.5
CLSTN3-209ENST00000539982 H3BM21 787 aa11.91□□□□□ -0.5
CLSTN3-209ENST00000539982 AQP9O43315 295 aa11.91□□□□□ -0.5
CLSTN3-209ENST00000539982 GJB6O95452 261 aa11.91□□□□□ -0.5
CLSTN3-209ENST00000539982 PRNPP04156 253 aa11.91□□□□□ -0.5
CLSTN3-209ENST00000539982 ITGA2BP08514 1039 aa11.91□□□□□ -0.5
CLSTN3-209ENST00000539982 SLC2A3P11169 496 aa11.91□□□□□ -0.5
CLSTN3-209ENST00000539982 ANP32AP39687 249 aaKnown RBP11.91□□□□□ -0.5
CLSTN3-209ENST00000539982 SYKP43405 635 aa11.91□□□□□ -0.5
CLSTN3-209ENST00000539982 YWHAZP63104 245 aaKnown RBP11.91□□□□□ -0.5
CLSTN3-209ENST00000539982 DNM1Q05193 864 aaKnown RBP11.91□□□□□ -0.5
CLSTN3-209ENST00000539982 NR0B2Q15466 257 aa11.91□□□□□ -0.5
CLSTN3-209ENST00000539982 TMEM259Q4ZIN3 620 aa11.91□□□□□ -0.5
CLSTN3-209ENST00000539982 SEL1L3Q68CR1 1132 aa11.91□□□□□ -0.5
CLSTN3-209ENST00000539982 OR6B2Q6IFH4 312 aa11.91□□□□□ -0.5
CLSTN3-209ENST00000539982 USP53Q70EK8 1073 aa11.91□□□□□ -0.5
CLSTN3-209ENST00000539982 ERN2Q76MJ5 926 aaKnown RBP11.91□□□□□ -0.5
CLSTN3-209ENST00000539982 PTAR1Q7Z6K3 402 aaPredicted RBP11.91□□□□□ -0.5
CLSTN3-209ENST00000539982 OR52K2Q8NGK3 314 aa11.91□□□□□ -0.5
CLSTN3-209ENST00000539982 OR2A12Q8NGT7 310 aa11.91□□□□□ -0.5
CLSTN3-209ENST00000539982 WDR48Q8TAF3 677 aa11.91□□□□□ -0.5
CLSTN3-209ENST00000539982 CCDC114Q96M63 670 aa11.91□□□□□ -0.5
CLSTN3-209ENST00000539982 ARHGAP9Q9BRR9 750 aa11.91□□□□□ -0.5
CLSTN3-209ENST00000539982 HDAC8Q9BY41 377 aa11.91□□□□□ -0.5
CLSTN3-209ENST00000539982 SLC17A9Q9BYT1 436 aa11.91□□□□□ -0.5
CLSTN3-209ENST00000539982 POPDC2Q9HBU9 364 aa11.91□□□□□ -0.5
CLSTN3-209ENST00000539982 ST7Q9NRC1 585 aa11.91□□□□□ -0.5
CLSTN3-209ENST00000539982 IPO11Q9UI26 975 aaKnown RBP11.91□□□□□ -0.5
CLSTN3-209ENST00000539982 HS3ST2Q9Y278 367 aa11.91□□□□□ -0.5
CLSTN3-209ENST00000539982 BOD1L1Q8NFC6 3051 aa11.91□□□□□ -0.5
CLSTN3-209ENST00000539982 CCDC187A0A096LP49 1063 aa11.9□□□□□ -0.5
CLSTN3-209ENST00000539982 SLC16A3O15427 465 aaKnown RBP11.9□□□□□ -0.5
CLSTN3-209ENST00000539982 SUV39H1O43463 412 aa11.9□□□□□ -0.5
CLSTN3-209ENST00000539982 PAK4O96013 591 aaPredicted RBP11.9□□□□□ -0.5
CLSTN3-209ENST00000539982 MT-CO1P00395 513 aa11.9□□□□□ -0.5
CLSTN3-209ENST00000539982 CALCAP01258 141 aa11.9□□□□□ -0.5
CLSTN3-209ENST00000539982 ITGB2P05107 769 aa11.9□□□□□ -0.5
CLSTN3-209ENST00000539982 SFTPCP11686 197 aa11.9□□□□□ -0.5
CLSTN3-209ENST00000539982 SRCP12931 536 aa11.9□□□□□ -0.5
CLSTN3-209ENST00000539982 ITGB6P18564 788 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms