RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 DLGAP3O95886 979 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 GNAO1P09471 354 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 TRIM49P0CI25 452 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 TRIM49CP0CI26 452 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 ENO3P13929 434 aaPredicted RBP12.63□□□□□ -0.39
USP3-203ENST00000538686 HOXB1P14653 301 aaPredicted RBP12.63□□□□□ -0.39
USP3-203ENST00000538686 FGFR3P22607 806 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 SSTR3P32745 418 aaPredicted RBP12.63□□□□□ -0.39
USP3-203ENST00000538686 CAPGP40121 348 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 ELK3P41970 407 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 CBX5P45973 191 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 ABCE1P61221 599 aaKnown RBP12.63□□□□□ -0.39
USP3-203ENST00000538686 BNC1Q01954 994 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 FSTL1Q12841 308 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 ALCAMQ13740 583 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 LAMC2Q13753 1193 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 HIST2H2ACQ16777 129 aaPredicted RBP12.63□□□□□ -0.39
USP3-203ENST00000538686 TYSND1Q2T9J0 566 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 EPC2Q52LR7 807 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 C15orf52Q6ZUT6 534 aaKnown RBP12.63□□□□□ -0.39
USP3-203ENST00000538686 ERMP1Q7Z2K6 904 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 MCOLN2Q8IZK6 566 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 FBXL6Q8N531 539 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 PPM1NQ8N819 430 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 ZSWIM2Q8NEG5 633 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 BPIFB6Q8NFQ5 453 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 OR6F1Q8NGZ6 308 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 SHC3Q92529 594 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 DACH2Q96NX9 599 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 TWNKQ96RR1 684 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 NOL11Q9H8H0 719 aaKnown RBP12.63□□□□□ -0.39
USP3-203ENST00000538686 SPC25Q9HBM1 224 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 RPRD1BQ9NQG5 326 aaKnown RBP12.63□□□□□ -0.39
USP3-203ENST00000538686 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.63□□□□□ -0.39
USP3-203ENST00000538686 IFT80Q9P2H3 777 aaPredicted RBP12.63□□□□□ -0.39
USP3-203ENST00000538686 CNOT6Q9ULM6 557 aaKnown RBP12.63□□□□□ -0.39
USP3-203ENST00000538686 C16orf96A6NNT2 1141 aa12.62□□□□□ -0.39
USP3-203ENST00000538686 KBTBD13C9JR72 458 aa12.62□□□□□ -0.39
USP3-203ENST00000538686 H0YC42 278 aa12.62□□□□□ -0.39
USP3-203ENST00000538686 LYPLA1O75608 230 aaPredicted RBP12.62□□□□□ -0.39
USP3-203ENST00000538686 PIAS1O75925 651 aa12.62□□□□□ -0.39
USP3-203ENST00000538686 BMP4P12644 408 aa12.62□□□□□ -0.39
USP3-203ENST00000538686 PRKCHP24723 683 aa12.62□□□□□ -0.39
USP3-203ENST00000538686 RPL10P27635 214 aaKnown RBP12.62□□□□□ -0.39
USP3-203ENST00000538686 ALDH7A1P49419 539 aaKnown RBP12.62□□□□□ -0.39
USP3-203ENST00000538686 TPD52P55327 224 aaPredicted RBP12.62□□□□□ -0.39
USP3-203ENST00000538686 CLCQ05315 142 aa12.62□□□□□ -0.39
USP3-203ENST00000538686 LIN9Q5TKA1 542 aa12.62□□□□□ -0.39
USP3-203ENST00000538686 LRRC38Q5VT99 294 aa12.62□□□□□ -0.39
USP3-203ENST00000538686 DCUN1D2Q6PH85 259 aa12.62□□□□□ -0.39
USP3-203ENST00000538686 SLC47A2Q86VL8 602 aa12.62□□□□□ -0.39
USP3-203ENST00000538686 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.62□□□□□ -0.39
USP3-203ENST00000538686 ZFPM1Q8IX07 1006 aa12.62□□□□□ -0.39
USP3-203ENST00000538686 TCAIMQ8N3R3 496 aa12.62□□□□□ -0.39
USP3-203ENST00000538686 NGLY1Q96IV0 654 aa12.62□□□□□ -0.39
USP3-203ENST00000538686 SLITRK1Q96PX8 696 aa12.62□□□□□ -0.39
USP3-203ENST00000538686 SORT1Q99523 831 aa12.62□□□□□ -0.39
USP3-203ENST00000538686 TARS2Q9BW92 718 aaKnown RBP12.62□□□□□ -0.39
USP3-203ENST00000538686 RHOBTB2Q9BYZ6 727 aa12.62□□□□□ -0.39
USP3-203ENST00000538686 PNPOQ9NVS9 261 aa12.62□□□□□ -0.39
USP3-203ENST00000538686 TMEM260Q9NX78 707 aa12.62□□□□□ -0.39
USP3-203ENST00000538686 TEX264Q9Y6I9 313 aa12.62□□□□□ -0.39
USP3-203ENST00000538686 SCN7AQ01118 1682 aa12.62□□□□□ -0.39
USP3-203ENST00000538686 LINC00854A0A1B0GVQ3 168 aa12.61□□□□□ -0.39
USP3-203ENST00000538686 ERVH48-1M5A8F1 160 aa12.61□□□□□ -0.39
USP3-203ENST00000538686 TMEM191BP0C7N4 346 aa12.61□□□□□ -0.39
USP3-203ENST00000538686 CYP2D6P10635 497 aa12.61□□□□□ -0.39
USP3-203ENST00000538686 CD58P19256 250 aa12.61□□□□□ -0.39
USP3-203ENST00000538686 DDOSTP39656 456 aa12.61□□□□□ -0.39
USP3-203ENST00000538686 CLCNKBP51801 687 aa12.61□□□□□ -0.39
USP3-203ENST00000538686 STK11Q15831 433 aa12.61□□□□□ -0.39
USP3-203ENST00000538686 ATAD3CQ5T2N8 411 aa12.61□□□□□ -0.39
USP3-203ENST00000538686 ANKRD22Q5VYY1 191 aa12.61□□□□□ -0.39
USP3-203ENST00000538686 ATG14Q6ZNE5 492 aa12.61□□□□□ -0.39
USP3-203ENST00000538686 RIOX2Q8IUF8 465 aa12.61□□□□□ -0.39
USP3-203ENST00000538686 LYSMD2Q8IV50 215 aa12.61□□□□□ -0.39
USP3-203ENST00000538686 CCDC103Q8IW40 242 aa12.61□□□□□ -0.39
USP3-203ENST00000538686 SLFN12Q8IYM2 578 aa12.61□□□□□ -0.39
USP3-203ENST00000538686 SVOPQ8N4V2 548 aa12.61□□□□□ -0.39
USP3-203ENST00000538686 DHRSXQ8N5I4 330 aa12.61□□□□□ -0.39
USP3-203ENST00000538686 LEMD2Q8NC56 503 aa12.61□□□□□ -0.39
USP3-203ENST00000538686 OR5H6Q8NGV6 325 aa12.61□□□□□ -0.39
USP3-203ENST00000538686 LHFPL5Q8TAF8 219 aa12.61□□□□□ -0.39
USP3-203ENST00000538686 SLC35B2Q8TB61 432 aa12.61□□□□□ -0.39
USP3-203ENST00000538686 PIK3R3Q92569 461 aa12.61□□□□□ -0.39
USP3-203ENST00000538686 HTRA1Q92743 480 aa12.61□□□□□ -0.39
USP3-203ENST00000538686 USP13Q92995 863 aaPredicted RBP12.61□□□□□ -0.39
USP3-203ENST00000538686 RCN3Q96D15 328 aa12.61□□□□□ -0.39
USP3-203ENST00000538686 REXO5Q96IC2 774 aaKnown RBP12.61□□□□□ -0.39
USP3-203ENST00000538686 CSF3RQ99062 836 aa12.61□□□□□ -0.39
USP3-203ENST00000538686 NECTIN3Q9NQS3 549 aa12.61□□□□□ -0.39
USP3-203ENST00000538686 TOPORSQ9NS56 1045 aaPredicted RBP12.61□□□□□ -0.39
USP3-203ENST00000538686 TANC1Q9C0D5 1861 aa12.61□□□□□ -0.39
USP3-203ENST00000538686 TRIM77I1YAP6 450 aa12.61□□□□□ -0.39
USP3-203ENST00000538686 SLC9A3R1O14745 358 aaPredicted RBP12.61□□□□□ -0.39
USP3-203ENST00000538686 KCNK2O95069 426 aa12.61□□□□□ -0.39
USP3-203ENST00000538686 IL18RAPO95256 599 aa12.61□□□□□ -0.39
USP3-203ENST00000538686 TRIM16O95361 564 aa12.61□□□□□ -0.39
USP3-203ENST00000538686 EEF1B2P24534 225 aaKnown RBP12.61□□□□□ -0.39
USP3-203ENST00000538686 RFC4P35249 363 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms