RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 CGREF1Q99674 301 aa14.24□□□□□ -0.13
LIG1-203ENST00000536218 CACNG4Q9UBN1 327 aa14.24□□□□□ -0.13
LIG1-203ENST00000536218 APOBEC2Q9Y235 224 aaKnown RBP14.24□□□□□ -0.13
LIG1-203ENST00000536218 A0A1W2PPW3 197 aa14.24□□□□□ -0.13
LIG1-203ENST00000536218 KRT7P08729 469 aa14.24□□□□□ -0.13
LIG1-203ENST00000536218 ZNF865P0CJ78 1059 aaPredicted RBP14.24□□□□□ -0.13
LIG1-203ENST00000536218 GSSP48637 474 aa14.24□□□□□ -0.13
LIG1-203ENST00000536218 SF3B4Q15427 424 aaKnown RBP eCLIP14.24□□□□□ -0.131e-7■■■■■ 41.2
LIG1-203ENST00000536218 CES4AQ5XG92 561 aa14.24□□□□□ -0.13
LIG1-203ENST00000536218 BEST2Q8NFU1 509 aa14.24□□□□□ -0.13
LIG1-203ENST00000536218 EME1Q96AY2 570 aa14.24□□□□□ -0.13
LIG1-203ENST00000536218 TAMM41Q96BW9 452 aa14.24□□□□□ -0.13
LIG1-203ENST00000536218 PPCSQ9HAB8 311 aa14.24□□□□□ -0.13
LIG1-203ENST00000536218 EPS15L1Q9UBC2 864 aa14.24□□□□□ -0.13
LIG1-203ENST00000536218 NME7Q9Y5B8 376 aa14.24□□□□□ -0.13
LIG1-203ENST00000536218 ARHGEF37A1IGU5 675 aa14.23□□□□□ -0.13
LIG1-203ENST00000536218 UNCXA6NJT0 531 aa14.23□□□□□ -0.13
LIG1-203ENST00000536218 A6NL46 340 aa14.23□□□□□ -0.13
LIG1-203ENST00000536218 AOC1P19801 751 aa14.23□□□□□ -0.13
LIG1-203ENST00000536218 ITGAXP20702 1163 aa14.23□□□□□ -0.13
LIG1-203ENST00000536218 NR4A1P22736 598 aa14.23□□□□□ -0.13
LIG1-203ENST00000536218 TUFMP49411 452 aaKnown RBP14.23□□□□□ -0.13
LIG1-203ENST00000536218 CDH6P55285 790 aa14.23□□□□□ -0.13
LIG1-203ENST00000536218 PRAMEP78395 509 aa14.23□□□□□ -0.13
LIG1-203ENST00000536218 SNX17Q15036 470 aa14.23□□□□□ -0.13
LIG1-203ENST00000536218 FNBP1LQ5T0N5 605 aa14.23□□□□□ -0.13
LIG1-203ENST00000536218 TRNP1Q6NT89 227 aa14.23□□□□□ -0.13
LIG1-203ENST00000536218 PGM2L1Q6PCE3 622 aa14.23□□□□□ -0.13
LIG1-203ENST00000536218 TTC30AQ86WT1 665 aa14.23□□□□□ -0.13
LIG1-203ENST00000536218 MZB1Q8WU39 189 aa14.23□□□□□ -0.13
LIG1-203ENST00000536218 C20orf27Q9GZN8 174 aa14.23□□□□□ -0.13
LIG1-203ENST00000536218 VRTNQ9H8Y1 702 aa14.23□□□□□ -0.13
LIG1-203ENST00000536218 FAM47E-STBD1D6RA91 191 aa14.23□□□□□ -0.13
LIG1-203ENST00000536218 FAM155BO75949 473 aa14.23□□□□□ -0.13
LIG1-203ENST00000536218 BAIAP3O94812 1187 aa14.23□□□□□ -0.13
LIG1-203ENST00000536218 HOXD8P13378 290 aaPredicted RBP14.23□□□□□ -0.13
LIG1-203ENST00000536218 LMO2P25791 158 aa14.23□□□□□ -0.13
LIG1-203ENST00000536218 GDF10P55107 478 aa14.23□□□□□ -0.13
LIG1-203ENST00000536218 RAB15P59190 212 aa14.23□□□□□ -0.13
LIG1-203ENST00000536218 MORF4L2Q15014 288 aa14.23□□□□□ -0.13
LIG1-203ENST00000536218 MORN1Q5T089 497 aa14.23□□□□□ -0.13
LIG1-203ENST00000536218 NPNTQ6UXI9 565 aa14.23□□□□□ -0.13
LIG1-203ENST00000536218 NIPA2Q8N8Q9 360 aa14.23□□□□□ -0.13
LIG1-203ENST00000536218 USP33Q8TEY7 942 aa14.23□□□□□ -0.13
LIG1-203ENST00000536218 PEBP4Q96S96 227 aa14.23□□□□□ -0.13
LIG1-203ENST00000536218 ACSS3Q9H6R3 686 aa14.23□□□□□ -0.13
LIG1-203ENST00000536218 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.23□□□□□ -0.13
LIG1-203ENST00000536218 SCHIP1Q9P0W5 487 aaPredicted RBP14.23□□□□□ -0.13
LIG1-203ENST00000536218 CFLARO15519 480 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 KLHL41O60662 606 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 ATE1O95260 518 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 PFKMP08237 780 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 MZF1P28698 734 aaPredicted RBP14.22□□□□□ -0.13
LIG1-203ENST00000536218 GNA12Q03113 381 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 ADGRE1Q14246 886 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 LCLAT1Q6UWP7 414 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 MCRS1Q96EZ8 462 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 C7orf26Q96N11 449 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 HGH1Q9BTY7 390 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 ZFYVE28Q9HCC9 887 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 ASNSD1Q9NWL6 643 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 ITM2BQ9Y287 266 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 MYRFQ9Y2G1 1151 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 NR2E3Q9Y5X4 410 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 CITO14578 2027 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 SMIM35A0A1B0GVV1 85 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 C3orf70A6NLC5 250 aaPredicted RBP14.22□□□□□ -0.13
LIG1-203ENST00000536218 TRIM49D1C9J1S8 452 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 TNPO2O14787 897 aaKnown RBP14.22□□□□□ -0.13
LIG1-203ENST00000536218 AQP9O43315 295 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 LYPLA1O75608 230 aaPredicted RBP14.22□□□□□ -0.13
LIG1-203ENST00000536218 H6PDO95479 791 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 GPD1P21695 349 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 INCA1Q0VD86 236 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 FLOT2Q14254 428 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 CCDC142Q17RM4 750 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 SOWAHAQ2M3V2 549 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 ANKRD22Q5VYY1 191 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 TWF2Q6IBS0 349 aaKnown RBP14.22□□□□□ -0.13
LIG1-203ENST00000536218 FRMD7Q6ZUT3 714 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 GPR180Q86V85 440 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 RSAD2Q8WXG1 361 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 RMND5BQ96G75 393 aaPredicted RBP14.22□□□□□ -0.13
LIG1-203ENST00000536218 PKP2Q99959 881 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 TMEM79Q9BSE2 394 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 SEMA6AQ9H2E6 1030 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 DKK3Q9UBP4 350 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 RNF11Q9Y3C5 154 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 TRIP12Q14669 1992 aaPredicted RBP14.22□□□□□ -0.13
LIG1-203ENST00000536218 C1orf232A0A0U1RR37 186 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 SMIM28A0A1B0GU29 152 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 KRBA1A5PL33 1030 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 SDR42E2A6NKP2 422 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 ESRRBO95718 433 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 CTSHP09668 335 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 LCP1P13796 627 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 GPR107Q5VW38 600 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 C9orf57Q5W0N0 161 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 CATSPER1Q8NEC5 780 aa14.22□□□□□ -0.13
LIG1-203ENST00000536218 CLEC4CQ8WTT0 213 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms