RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 POM121BA6NF01 834 aa4.4□□□□□ -1.71
CD44-235ENST00000532339 CYSRT1A8MQ03 144 aa4.4□□□□□ -1.71
CD44-235ENST00000532339 AGPSO00116 658 aa4.4□□□□□ -1.71
CD44-235ENST00000532339 CLIC1O00299 241 aa4.4□□□□□ -1.71
CD44-235ENST00000532339 TNPO2O14787 897 aaKnown RBP4.4□□□□□ -1.71
CD44-235ENST00000532339 FYB1O15117 783 aa4.4□□□□□ -1.71
CD44-235ENST00000532339 PIP5K1CO60331 668 aa4.4□□□□□ -1.71
CD44-235ENST00000532339 SNX2O60749 519 aa4.4□□□□□ -1.71
CD44-235ENST00000532339 NBNO60934 754 aa4.4□□□□□ -1.71
CD44-235ENST00000532339 IL1R1P14778 569 aa4.4□□□□□ -1.71
CD44-235ENST00000532339 ATF7P17544 494 aaPredicted RBP4.4□□□□□ -1.71
CD44-235ENST00000532339 ADRA1DP25100 572 aa4.4□□□□□ -1.71
CD44-235ENST00000532339 MCM5P33992 734 aa4.4□□□□□ -1.71
CD44-235ENST00000532339 PPM1AP35813 382 aa4.4□□□□□ -1.71
CD44-235ENST00000532339 RPS13P62277 151 aaKnown RBP4.4□□□□□ -1.71
CD44-235ENST00000532339 MFSD13AQ14CX5 517 aa4.4□□□□□ -1.71
CD44-235ENST00000532339 SEC23BQ15437 767 aa4.4□□□□□ -1.71
CD44-235ENST00000532339 RAB30Q15771 203 aa4.4□□□□□ -1.71
CD44-235ENST00000532339 TMEM95Q3KNT9 176 aa4.4□□□□□ -1.71
CD44-235ENST00000532339 FAM209BQ5JX69 171 aa4.4□□□□□ -1.71
CD44-235ENST00000532339 ANO1Q5XXA6 986 aa4.4□□□□□ -1.71
CD44-235ENST00000532339 TTC5Q8N0Z6 440 aa4.4□□□□□ -1.71
CD44-235ENST00000532339 NSMCE1Q8WV22 266 aa4.4□□□□□ -1.71
CD44-235ENST00000532339 EDC3Q96F86 508 aaKnown RBP4.4□□□□□ -1.71
CD44-235ENST00000532339 HIC2Q96JB3 615 aa4.4□□□□□ -1.71
CD44-235ENST00000532339 COLEC11Q9BWP8 271 aa4.4□□□□□ -1.71
CD44-235ENST00000532339 CHST8Q9H2A9 424 aa4.4□□□□□ -1.71
CD44-235ENST00000532339 SLC28A3Q9HAS3 691 aa4.4□□□□□ -1.71
CD44-235ENST00000532339 ARFGAP3Q9NP61 516 aa4.4□□□□□ -1.71
CD44-235ENST00000532339 PNPLA8Q9NP80 782 aa4.4□□□□□ -1.71
CD44-235ENST00000532339 DNAJB11Q9UBS4 358 aa4.4□□□□□ -1.71
CD44-235ENST00000532339 DKK4Q9UBT3 224 aa4.4□□□□□ -1.71
CD44-235ENST00000532339 CDC23Q9UJX2 597 aa4.4□□□□□ -1.71
CD44-235ENST00000532339 ITGB1BP2Q9UKP3 347 aa4.4□□□□□ -1.71
CD44-235ENST00000532339 PLXNA3P51805 1871 aa4.4□□□□□ -1.71
CD44-235ENST00000532339 ZNF462Q96JM2 2506 aa4.4□□□□□ -1.71
CD44-235ENST00000532339 VPS13AQ96RL7 3174 aa4.4□□□□□ -1.71
CD44-235ENST00000532339 SPTBN2O15020 2390 aa4.39□□□□□ -1.71
CD44-235ENST00000532339 HELZ2Q9BYK8 2649 aaKnown RBP4.39□□□□□ -1.71
CD44-235ENST00000532339 WDR87Q6ZQQ6 2873 aa4.39□□□□□ -1.71
CD44-235ENST00000532339 A0A1W2PPC4 97 aa4.39□□□□□ -1.71
CD44-235ENST00000532339 CCDC189A1A4V9 331 aa4.39□□□□□ -1.71
CD44-235ENST00000532339 FGF18O76093 207 aa4.39□□□□□ -1.71
CD44-235ENST00000532339 IL18RAPO95256 599 aa4.39□□□□□ -1.71
CD44-235ENST00000532339 BTF3P20290 206 aaKnown RBP4.39□□□□□ -1.71
CD44-235ENST00000532339 SCP2P22307 547 aa4.39□□□□□ -1.71
CD44-235ENST00000532339 THBS4P35443 961 aa4.39□□□□□ -1.71
CD44-235ENST00000532339 TXNL4AP83876 142 aaKnown RBP4.39□□□□□ -1.71
CD44-235ENST00000532339 HSF1Q00613 529 aa4.39□□□□□ -1.71
CD44-235ENST00000532339 CFHR1Q03591 330 aa4.39□□□□□ -1.71
CD44-235ENST00000532339 SRSF1Q07955 248 aaKnown RBP eCLIP4.39□□□□□ -1.71
CD44-235ENST00000532339 DMWDQ09019 674 aa4.39□□□□□ -1.71
CD44-235ENST00000532339 GRAPQ13588 217 aa4.39□□□□□ -1.71
CD44-235ENST00000532339 PMS2P11Q13670 270 aa4.39□□□□□ -1.71
CD44-235ENST00000532339 RAPGEF1Q13905 1077 aa4.39□□□□□ -1.71
CD44-235ENST00000532339 CLCA4Q14CN2 919 aa4.39□□□□□ -1.71
CD44-235ENST00000532339 TRIM71Q2Q1W2 868 aaKnown RBP4.39□□□□□ -1.71
CD44-235ENST00000532339 HIBCHQ6NVY1 386 aaPredicted RBP4.39□□□□□ -1.71
CD44-235ENST00000532339 USP49Q70CQ1 688 aa4.39□□□□□ -1.71
CD44-235ENST00000532339 ANKRD23Q86SG2 305 aa4.39□□□□□ -1.71
CD44-235ENST00000532339 ANKRD13BQ86YJ7 626 aa4.39□□□□□ -1.71
CD44-235ENST00000532339 MYLK4Q86YV6 388 aaPredicted RBP4.39□□□□□ -1.71
CD44-235ENST00000532339 CCDC33Q8N5R6 958 aa4.39□□□□□ -1.71
CD44-235ENST00000532339 METTL25Q8N6Q8 603 aa4.39□□□□□ -1.71
CD44-235ENST00000532339 C11orf44Q8N8P7 122 aa4.39□□□□□ -1.71
CD44-235ENST00000532339 GRAPLQ8TC17 118 aaPredicted RBP4.39□□□□□ -1.71
CD44-235ENST00000532339 ZDHHC12Q96GR4 267 aa4.39□□□□□ -1.71
CD44-235ENST00000532339 VCPIP1Q96JH7 1222 aa4.39□□□□□ -1.71
CD44-235ENST00000532339 HIST1H2AAQ96QV6 131 aa4.39□□□□□ -1.71
CD44-235ENST00000532339 UPF3BQ9BZI7 483 aaKnown RBP4.39□□□□□ -1.71
CD44-235ENST00000532339 EBF3Q9H4W6 596 aa4.39□□□□□ -1.71
CD44-235ENST00000532339 TMEM184CQ9NVA4 438 aa4.39□□□□□ -1.71
CD44-235ENST00000532339 POLLQ9UGP5 575 aa4.39□□□□□ -1.71
CD44-235ENST00000532339 MTCH2Q9Y6C9 303 aa4.39□□□□□ -1.71
CD44-235ENST00000532339 PTPN13Q12923 2485 aa4.39□□□□□ -1.71
CD44-235ENST00000532339 TRIOO75962 3097 aa4.39□□□□□ -1.71
CD44-235ENST00000532339 EP300Q09472 2414 aaPredicted RBP4.38□□□□□ -1.71
CD44-235ENST00000532339 CEP250Q9BV73 2442 aa4.38□□□□□ -1.71
CD44-235ENST00000532339 SCN9AQ15858 1988 aa4.38□□□□□ -1.71
CD44-235ENST00000532339 UBR2Q8IWV8 1755 aa4.38□□□□□ -1.71
CD44-235ENST00000532339 FAM90A10PA6NDY2 464 aa4.38□□□□□ -1.71
CD44-235ENST00000532339 PDHXO00330 501 aa4.38□□□□□ -1.71
CD44-235ENST00000532339 CNOT3O75175 753 aaKnown RBP4.38□□□□□ -1.71
CD44-235ENST00000532339 CTSAP10619 480 aa4.38□□□□□ -1.71
CD44-235ENST00000532339 PAX3P23760 479 aa4.38□□□□□ -1.71
CD44-235ENST00000532339 RBL1P28749 1068 aa4.38□□□□□ -1.71
CD44-235ENST00000532339 TACR3P29371 465 aa4.38□□□□□ -1.71
CD44-235ENST00000532339 HALP42357 657 aa4.38□□□□□ -1.71
CD44-235ENST00000532339 CARSP49589 748 aaKnown RBP4.38□□□□□ -1.71
CD44-235ENST00000532339 EIF4A1P60842 406 aaKnown RBP4.38□□□□□ -1.71
CD44-235ENST00000532339 TNFAIP2Q03169 654 aa4.38□□□□□ -1.71
CD44-235ENST00000532339 DEUP1Q05D60 604 aa4.38□□□□□ -1.71
CD44-235ENST00000532339 SLC14A1Q13336 389 aa4.38□□□□□ -1.71
CD44-235ENST00000532339 VGLL4Q14135 290 aa4.38□□□□□ -1.71
CD44-235ENST00000532339 TRIM14Q14142 442 aa4.38□□□□□ -1.71
CD44-235ENST00000532339 HLFQ16534 295 aa4.38□□□□□ -1.71
CD44-235ENST00000532339 PFKFB3Q16875 520 aaPredicted RBP4.38□□□□□ -1.71
CD44-235ENST00000532339 MAP3K21Q5TCX8 1036 aa4.38□□□□□ -1.71
CD44-235ENST00000532339 KLHDC7AQ5VTJ3 777 aa4.38□□□□□ -1.71
CD44-235ENST00000532339 PLAG1Q6DJT9 500 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms