RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 RNF148Q8N7C7 305 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 FAM47BQ8NA70 645 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 GOLM1Q8NBJ4 401 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 COLGALT1Q8NBJ5 622 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 GRIN3AQ8TCU5 1115 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 TMA16Q96EY4 203 aaKnown RBP9.84□□□□□ -0.83
SYNE1-230ENST00000495090 AGAP3Q96P47 875 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 TCF12Q99081 682 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 SLC29A1Q99808 456 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 TUBA1CQ9BQE3 449 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 MCMBPQ9BTE3 642 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 FTHL17Q9BXU8 183 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 ACE2Q9BYF1 805 aaPredicted RBP9.84□□□□□ -0.83
SYNE1-230ENST00000495090 C20orf96Q9NUD7 363 aaPredicted RBP9.84□□□□□ -0.83
SYNE1-230ENST00000495090 DTLQ9NZJ0 730 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 RCOR3Q9P2K3 495 aaPredicted RBP9.84□□□□□ -0.83
SYNE1-230ENST00000495090 CD300AQ9UGN4 299 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 SIX4Q9UIU6 781 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 CTDP1Q9Y5B0 961 aaPredicted RBP9.84□□□□□ -0.83
SYNE1-230ENST00000495090 SLC30A1Q9Y6M5 507 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 TANC1Q9C0D5 1861 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 TRIM43BA6NCK2 446 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 IQCA1LA6NCM1 817 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 TMEM247A6NEH6 219 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 H3BMQ9 156 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 SNAP91O60641 907 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 LTFP02788 710 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 C2P06681 752 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 COL6A2P12110 1019 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 GABRB3P28472 473 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 HALP42357 657 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 GLUD2P49448 558 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 CDH8P55286 799 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 SNX16P57768 344 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 GRSF1Q12849 480 aaKnown RBP eCLIP9.84□□□□□ -0.83
SYNE1-230ENST00000495090 ZBTB17Q13105 803 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 LRP8Q14114 963 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 ANKDD1AQ495B1 522 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 NCBP2-AS2Q69YL0 99 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 FAM45BPQ6NSW5 357 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 HMBOX1Q6NT76 420 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 MPZL3Q6UWV2 235 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 CHSY3Q70JA7 882 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 ERMP1Q7Z2K6 904 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 STRA8Q7Z7C7 330 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 TMEM135Q86UB9 458 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 FAM83AQ86UY5 434 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 CAMK1DQ8IU85 385 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 TMEM151AQ8N4L1 468 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 ANKRD52Q8NB46 1076 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.84□□□□□ -0.83
SYNE1-230ENST00000495090 CXorf38Q8TB03 319 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 FAM45AQ8TCE6 357 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 PIWIL1Q96J94 861 aaKnown RBP9.84□□□□□ -0.83
SYNE1-230ENST00000495090 COG8Q96MW5 612 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 CSPG4P5Q96PW8 444 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 C11orf84Q9BUA3 381 aaPredicted RBP9.84□□□□□ -0.83
SYNE1-230ENST00000495090 NPLQ9BXD5 320 aaPredicted RBP9.84□□□□□ -0.83
SYNE1-230ENST00000495090 YTHDF1Q9BYJ9 559 aaKnown RBP9.84□□□□□ -0.83
SYNE1-230ENST00000495090 PAIP1Q9H074 479 aaKnown RBP9.84□□□□□ -0.83
SYNE1-230ENST00000495090 C2orf40Q9H1Z8 148 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 SEMA6AQ9H2E6 1030 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 CXorf21Q9HAI6 301 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 PTPRHQ9HD43 1115 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 SPAG4Q9NPE6 437 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 CD320Q9NPF0 282 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 RNF146Q9NTX7 359 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 ADA2Q9NZK5 511 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 HMGXB4Q9UGU5 601 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 ZDHHC2Q9UIJ5 367 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 CNOT6Q9ULM6 557 aaKnown RBP9.84□□□□□ -0.83
SYNE1-230ENST00000495090 CLEC11AQ9Y240 323 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 SNX13Q9Y5W8 968 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 ANK1P16157 1881 aa9.83□□□□□ -0.84
SYNE1-230ENST00000495090 GAS2O43903 313 aaKnown RBP9.83□□□□□ -0.84
SYNE1-230ENST00000495090 NPHS1O60500 1241 aa9.83□□□□□ -0.84
SYNE1-230ENST00000495090 MAFO75444 373 aaPredicted RBP9.83□□□□□ -0.84
SYNE1-230ENST00000495090 SULT1C4O75897 302 aa9.83□□□□□ -0.84
SYNE1-230ENST00000495090 DDHD2O94830 711 aa9.83□□□□□ -0.84
SYNE1-230ENST00000495090 ATE1O95260 518 aa9.83□□□□□ -0.84
SYNE1-230ENST00000495090 PRKCBP05771 671 aa9.83□□□□□ -0.84
SYNE1-230ENST00000495090 HSPA8P11142 646 aaKnown RBP9.83□□□□□ -0.84
SYNE1-230ENST00000495090 ICAM3P32942 547 aa9.83□□□□□ -0.84
SYNE1-230ENST00000495090 HOXD12P35452 270 aa9.83□□□□□ -0.84
SYNE1-230ENST00000495090 SCNN1AP37088 669 aa9.83□□□□□ -0.84
SYNE1-230ENST00000495090 CDH15P55291 814 aa9.83□□□□□ -0.84
SYNE1-230ENST00000495090 SLC6A3Q01959 620 aa9.83□□□□□ -0.84
SYNE1-230ENST00000495090 GALNT2Q10471 571 aa9.83□□□□□ -0.84
SYNE1-230ENST00000495090 BCL2A1Q16548 175 aa9.83□□□□□ -0.84
SYNE1-230ENST00000495090 PPP6R3Q5H9R7 873 aaPredicted RBP9.83□□□□□ -0.84
SYNE1-230ENST00000495090 SAMD4BQ5PRF9 694 aaKnown RBP9.83□□□□□ -0.84
SYNE1-230ENST00000495090 FAM182AQ5T1J6 154 aa9.83□□□□□ -0.84
SYNE1-230ENST00000495090 TMEM198Q66K66 360 aa9.83□□□□□ -0.84
SYNE1-230ENST00000495090 C8orf82Q6P1X6 216 aaPredicted RBP9.83□□□□□ -0.84
SYNE1-230ENST00000495090 TTC33Q6PID6 262 aaPredicted RBP9.83□□□□□ -0.84
SYNE1-230ENST00000495090 GADL1Q6ZQY3 521 aa9.83□□□□□ -0.84
SYNE1-230ENST00000495090 EEPD1Q7L9B9 569 aa9.83□□□□□ -0.84
SYNE1-230ENST00000495090 ZBTB8OSQ8IWT0 167 aa9.83□□□□□ -0.84
SYNE1-230ENST00000495090 CENPSQ8N2Z9 138 aa9.83□□□□□ -0.84
SYNE1-230ENST00000495090 PDPRQ8NCN5 879 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms