RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 IGF2BP3O00425 579 aaKnown RBP eCLIP4.31□□□□□ -1.72
BRCA1-220ENST00000492859 FPGTO14772 594 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 CLPXO76031 633 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 SEMA3DO95025 777 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 ONECUT2O95948 504 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 LGI1O95970 557 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 CHEK2O96017 543 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 F9P00740 461 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 PENKP01210 267 aaPredicted RBP4.31□□□□□ -1.72
BRCA1-220ENST00000492859 NTRK1P04629 796 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 ITGA5P08648 1049 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 OSMP13725 252 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 FDPSP14324 419 aaKnown RBP4.31□□□□□ -1.72
BRCA1-220ENST00000492859 SLC9A1P19634 815 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 HNRNPA2B1P22626 353 aaKnown RBP4.31□□□□□ -1.72
BRCA1-220ENST00000492859 LORP23490 312 aaPredicted RBP4.31□□□□□ -1.72
BRCA1-220ENST00000492859 MAP4P27816 1152 aaKnown RBP4.31□□□□□ -1.72
BRCA1-220ENST00000492859 PSMA5P28066 241 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 AVPR2P30518 371 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 GMPRP36959 345 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 CAPGP40121 348 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 MCAMP43121 646 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 CLCNKBP51801 687 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 P2RX3P56373 397 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 NME5P56597 212 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 HTRA4P83105 476 aaPredicted RBP4.31□□□□□ -1.72
BRCA1-220ENST00000492859 LACTBP83111 547 aaPredicted RBP4.31□□□□□ -1.72
BRCA1-220ENST00000492859 GSTM4Q03013 218 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 CALCOCO2Q13137 446 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 DCTN2Q13561 401 aaKnown RBP4.31□□□□□ -1.72
BRCA1-220ENST00000492859 CUL3Q13618 768 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 IRF3Q14653 427 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 RPS6KA1Q15418 735 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 PARP6Q2NL67 630 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 CDONQ4KMG0 1287 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 ATAD3BQ5T9A4 648 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 PEAR1Q5VY43 1037 aaPredicted RBP4.31□□□□□ -1.72
BRCA1-220ENST00000492859 ZNF385CQ66K41 422 aaPredicted RBP4.31□□□□□ -1.72
BRCA1-220ENST00000492859 FAM171BQ6P995 826 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 GALNT18Q6P9A2 607 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 AFTPHQ6ULP2 937 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 CYP20A1Q6UW02 462 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 CES3Q6UWW8 571 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 MSANTD1Q6ZTZ1 278 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 SLC24A5Q71RS6 500 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 TRMT10CQ7L0Y3 403 aaKnown RBP4.31□□□□□ -1.72
BRCA1-220ENST00000492859 KANSL1Q7Z3B3 1105 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 AMZ2Q86W34 360 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 CCNJLQ8IV13 435 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 SEPT12Q8IYM1 358 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 C1orf127Q8N9H9 656 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 RCBTB1Q8NDN9 531 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 TRPV3Q8NET8 790 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 GPR156Q8NFN8 814 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 RAB3IL1Q8TBN0 382 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 METTL6Q8TCB7 284 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 ST7LQ8TDW4 575 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 CSGALNACT1Q8TDX6 532 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 GLMPQ8WWB7 406 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 MRPS27Q92552 414 aaKnown RBP4.31□□□□□ -1.72
BRCA1-220ENST00000492859 CORO2AQ92828 525 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 TANKQ92844 425 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 RAD51AP1Q96B01 352 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 RHBDF1Q96CC6 855 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 FAM122AQ96E09 287 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 TPD52L3Q96J77 140 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 SPATA13Q96N96 652 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 TRNT1Q96Q11 434 aaKnown RBP4.31□□□□□ -1.72
BRCA1-220ENST00000492859 ORAI2Q96SN7 254 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 SLC9A7Q96T83 725 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 ZBTB18Q99592 522 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 CCM2Q9BSQ5 444 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 NAA11Q9BSU3 229 aaPredicted RBP4.31□□□□□ -1.72
BRCA1-220ENST00000492859 CACNG6Q9BXT2 260 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 ACE2Q9BYF1 805 aaPredicted RBP4.31□□□□□ -1.72
BRCA1-220ENST00000492859 TRIM54Q9BYV2 358 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 GSX2Q9BZM3 304 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 KLC2Q9H0B6 622 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 EXO5Q9H790 373 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 ELP3Q9H9T3 547 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 ZNF287Q9HBT7 754 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 LTB4R2Q9NPC1 389 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 NGBQ9NPG2 151 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 KCNH7Q9NS40 1196 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 HCFC1R1Q9NWW0 138 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 DNAJC28Q9NX36 388 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 ANKMY1Q9P2S6 941 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 APEX2Q9UBZ4 518 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 ADAMTS6Q9UKP5 1117 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 ZNF214Q9UL59 606 aaPredicted RBP4.31□□□□□ -1.72
BRCA1-220ENST00000492859 CORO1CQ9ULV4 474 aaPredicted RBP4.31□□□□□ -1.72
BRCA1-220ENST00000492859 MTMR6Q9Y217 621 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 HIF3AQ9Y2N7 669 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 SRPRBQ9Y5M8 271 aaKnown RBP4.31□□□□□ -1.72
BRCA1-220ENST00000492859 CACNG2Q9Y698 323 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 TEX264Q9Y6I9 313 aa4.31□□□□□ -1.72
BRCA1-220ENST00000492859 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP4.31□□□□□ -1.72
BRCA1-220ENST00000492859 RPAP1Q9BWH6 1393 aaPredicted RBP4.3□□□□□ -1.72
BRCA1-220ENST00000492859 A0A1W2PQ67 120 aa4.3□□□□□ -1.72
BRCA1-220ENST00000492859 TMEM210A6NLX4 147 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms