RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 DPP10Q8N608 796 aa6.44□□□□□ -1.38
USP40-213ENST00000483216 ANKRD44Q8N8A2 993 aa6.44□□□□□ -1.38
USP40-213ENST00000483216 KDM1BQ8NB78 822 aa6.44□□□□□ -1.38
USP40-213ENST00000483216 NCSTNQ92542 709 aa6.44□□□□□ -1.38
USP40-213ENST00000483216 LPAR1Q92633 364 aa6.44□□□□□ -1.38
USP40-213ENST00000483216 COG8Q96MW5 612 aa6.44□□□□□ -1.38
USP40-213ENST00000483216 PSMD1Q99460 953 aa6.44□□□□□ -1.38
USP40-213ENST00000483216 SQORQ9Y6N5 450 aa6.44□□□□□ -1.38
USP40-213ENST00000483216 TNIKQ9UKE5 1360 aa6.44□□□□□ -1.38
USP40-213ENST00000483216 NESP48681 1621 aa6.43□□□□□ -1.38
USP40-213ENST00000483216 GOLGA3Q08378 1498 aa6.43□□□□□ -1.38
USP40-213ENST00000483216 DHX16O60231 1041 aaKnown RBP6.43□□□□□ -1.38
USP40-213ENST00000483216 OAZ2O95190 189 aa6.43□□□□□ -1.38
USP40-213ENST00000483216 DDAH2O95865 285 aa6.43□□□□□ -1.38
USP40-213ENST00000483216 SCP2P22307 547 aa6.43□□□□□ -1.38
USP40-213ENST00000483216 GJC1P36383 396 aa6.43□□□□□ -1.38
USP40-213ENST00000483216 RASSF2P50749 326 aa6.43□□□□□ -1.38
USP40-213ENST00000483216 PKP1Q13835 747 aa6.43□□□□□ -1.38
USP40-213ENST00000483216 ZRSR2Q15696 482 aaKnown RBP6.43□□□□□ -1.38
USP40-213ENST00000483216 Q5PR19 223 aa6.43□□□□□ -1.38
USP40-213ENST00000483216 TMEM199Q8N511 208 aa6.43□□□□□ -1.38
USP40-213ENST00000483216 SCAIQ8N9R8 606 aa6.43□□□□□ -1.38
USP40-213ENST00000483216 CMASQ8NFW8 434 aaPredicted RBP6.43□□□□□ -1.38
USP40-213ENST00000483216 NSMCE1Q8WV22 266 aa6.43□□□□□ -1.38
USP40-213ENST00000483216 FAR1Q8WVX9 515 aa6.43□□□□□ -1.38
USP40-213ENST00000483216 ZSCAN31Q96LW9 406 aaPredicted RBP6.43□□□□□ -1.38
USP40-213ENST00000483216 SCLT1Q96NL6 688 aa6.43□□□□□ -1.38
USP40-213ENST00000483216 TEFMQ96QE5 360 aaKnown RBP6.43□□□□□ -1.38
USP40-213ENST00000483216 IFT27Q9BW83 186 aa6.43□□□□□ -1.38
USP40-213ENST00000483216 TBC1D14Q9P2M4 693 aa6.43□□□□□ -1.38
USP40-213ENST00000483216 ICKQ9UPZ9 632 aa6.43□□□□□ -1.38
USP40-213ENST00000483216 DGKBQ9Y6T7 804 aa6.43□□□□□ -1.38
USP40-213ENST00000483216 CEP162Q5TB80 1403 aa6.42□□□□□ -1.38
USP40-213ENST00000483216 RUSC2Q8N2Y8 1516 aa6.42□□□□□ -1.38
USP40-213ENST00000483216 CD8B2A6NJW9 211 aa6.42□□□□□ -1.38
USP40-213ENST00000483216 TMCC1O94876 653 aa6.42□□□□□ -1.38
USP40-213ENST00000483216 CRYABP02511 175 aaKnown RBP6.42□□□□□ -1.38
USP40-213ENST00000483216 TNFSF8P32971 234 aa6.42□□□□□ -1.38
USP40-213ENST00000483216 MTNR1AP48039 350 aa6.42□□□□□ -1.38
USP40-213ENST00000483216 CCT5P48643 541 aa6.42□□□□□ -1.38
USP40-213ENST00000483216 POLGP54098 1239 aaPredicted RBP6.42□□□□□ -1.38
USP40-213ENST00000483216 GOLGA8FQ08AF8 430 aa6.42□□□□□ -1.38
USP40-213ENST00000483216 HNRNPA0Q13151 305 aaKnown RBP6.42□□□□□ -1.38
USP40-213ENST00000483216 EPHA10Q5JZY3 1008 aa6.42□□□□□ -1.38
USP40-213ENST00000483216 TMEM268Q5VZI3 342 aa6.42□□□□□ -1.38
USP40-213ENST00000483216 PARM1Q6UWI2 310 aa6.42□□□□□ -1.38
USP40-213ENST00000483216 FAM217AQ8IXS0 508 aa6.42□□□□□ -1.38
USP40-213ENST00000483216 SMC5Q8IY18 1101 aa6.42□□□□□ -1.38
USP40-213ENST00000483216 ZNF366Q8N895 744 aa6.42□□□□□ -1.38
USP40-213ENST00000483216 INPP5DQ92835 1189 aa6.42□□□□□ -1.38
USP40-213ENST00000483216 GCC1Q96CN9 775 aa6.42□□□□□ -1.38
USP40-213ENST00000483216 TWNKQ96RR1 684 aa6.42□□□□□ -1.38
USP40-213ENST00000483216 B3GNT4Q9C0J1 378 aa6.42□□□□□ -1.38
USP40-213ENST00000483216 TLR8Q9NR97 1041 aaKnown RBP6.42□□□□□ -1.38
USP40-213ENST00000483216 KIF21BO75037 1637 aa6.42□□□□□ -1.38
USP40-213ENST00000483216 TOP2BQ02880 1626 aa6.42□□□□□ -1.38
USP40-213ENST00000483216 BIVM-ERCC5R4GMW8 1640 aa6.42□□□□□ -1.38
USP40-213ENST00000483216 UNGP13051 313 aaPredicted RBP6.41□□□□□ -1.38
USP40-213ENST00000483216 SKIV2L2P42285 1042 aaKnown RBP6.41□□□□□ -1.38
USP40-213ENST00000483216 DAB2IPQ5VWQ8 1189 aa6.41□□□□□ -1.38
USP40-213ENST00000483216 KRTAP5-3Q6L8H2 238 aa6.41□□□□□ -1.38
USP40-213ENST00000483216 CAMK1DQ8IU85 385 aa6.41□□□□□ -1.38
USP40-213ENST00000483216 RNFT2Q96EX2 444 aa6.41□□□□□ -1.38
USP40-213ENST00000483216 CTDSP1Q9GZU7 261 aa6.41□□□□□ -1.38
USP40-213ENST00000483216 SIRT3Q9NTG7 399 aaPredicted RBP6.41□□□□□ -1.38
USP40-213ENST00000483216 FBXO40Q9UH90 709 aa6.41□□□□□ -1.38
USP40-213ENST00000483216 DHDHQ9UQ10 334 aa6.41□□□□□ -1.38
USP40-213ENST00000483216 GDAQ9Y2T3 454 aa6.41□□□□□ -1.38
USP40-213ENST00000483216 CEP164Q9UPV0 1460 aa6.41□□□□□ -1.38
USP40-213ENST00000483216 VWA3AA6NCI4 1184 aa6.4□□□□□ -1.38
USP40-213ENST00000483216 SPTLC2O15270 562 aa6.4□□□□□ -1.38
USP40-213ENST00000483216 RNMTO43148 476 aaKnown RBP6.4□□□□□ -1.38
USP40-213ENST00000483216 STRNO43815 780 aa6.4□□□□□ -1.38
USP40-213ENST00000483216 TSPAN3O60637 253 aa6.4□□□□□ -1.38
USP40-213ENST00000483216 NTN1O95631 604 aa6.4□□□□□ -1.38
USP40-213ENST00000483216 HOXB2P14652 356 aa6.4□□□□□ -1.38
USP40-213ENST00000483216 HNF1BP35680 557 aa6.4□□□□□ -1.38
USP40-213ENST00000483216 P2RX3P56373 397 aa6.4□□□□□ -1.38
USP40-213ENST00000483216 LINC00205P59089 165 aa6.4□□□□□ -1.38
USP40-213ENST00000483216 IL13RA2Q14627 380 aa6.4□□□□□ -1.38
USP40-213ENST00000483216 AP5B1Q2VPB7 878 aa6.4□□□□□ -1.38
USP40-213ENST00000483216 ODF3L2Q3SX64 289 aa6.4□□□□□ -1.38
USP40-213ENST00000483216 GJB7Q6PEY0 223 aa6.4□□□□□ -1.38
USP40-213ENST00000483216 SLC16A12Q6ZSM3 486 aa6.4□□□□□ -1.38
USP40-213ENST00000483216 GLCCI1Q86VQ1 547 aa6.4□□□□□ -1.38
USP40-213ENST00000483216 WDR5BQ86VZ2 330 aa6.4□□□□□ -1.38
USP40-213ENST00000483216 BICD2Q8TD16 824 aa6.4□□□□□ -1.38
USP40-213ENST00000483216 SH3KBP1Q96B97 665 aa6.4□□□□□ -1.38
USP40-213ENST00000483216 WDR77Q9BQA1 342 aaPredicted RBP6.4□□□□□ -1.38
USP40-213ENST00000483216 NPLQ9BXD5 320 aaPredicted RBP6.4□□□□□ -1.38
USP40-213ENST00000483216 ISCUQ9H1K1 167 aa6.4□□□□□ -1.38
USP40-213ENST00000483216 GRHL1Q9NZI5 618 aa6.4□□□□□ -1.38
USP40-213ENST00000483216 LUZP4Q9P127 313 aa6.4□□□□□ -1.38
USP40-213ENST00000483216 SUFUQ9UMX1 484 aa6.4□□□□□ -1.38
USP40-213ENST00000483216 TTC3P53804 2025 aa6.4□□□□□ -1.39
USP40-213ENST00000483216 PRDM2Q13029 1718 aa6.39□□□□□ -1.39
USP40-213ENST00000483216 A0A0A0MQY5 61 aa6.39□□□□□ -1.39
USP40-213ENST00000483216 C17orf102A2RUQ5 167 aa6.39□□□□□ -1.39
USP40-213ENST00000483216 OR6C68A6NDL8 312 aa6.39□□□□□ -1.39
USP40-213ENST00000483216 H0YGN5 161 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms