RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 FAM131BQ86XD5 332 aa21.51■■□□□ 1.03
UPF3A-202ENST00000375299 ACVR1CQ8NER5 493 aa21.51■■□□□ 1.03
UPF3A-202ENST00000375299 GFM2Q969S9 779 aaKnown RBP21.51■■□□□ 1.03
UPF3A-202ENST00000375299 ZNF597Q96LX8 424 aa21.51■■□□□ 1.03
UPF3A-202ENST00000375299 NPAS2Q99743 824 aa21.51■■□□□ 1.03
UPF3A-202ENST00000375299 PRDM12Q9H4Q4 367 aa21.51■■□□□ 1.03
UPF3A-202ENST00000375299 BFARQ9NZS9 450 aa21.51■■□□□ 1.03
UPF3A-202ENST00000375299 EPS15L1Q9UBC2 864 aa21.51■■□□□ 1.03
UPF3A-202ENST00000375299 ZSWIM8A7E2V4 1837 aa21.51■■□□□ 1.03
UPF3A-202ENST00000375299 C7orf72A4D263 438 aa21.5■■□□□ 1.03
UPF3A-202ENST00000375299 USP12O75317 370 aa21.5■■□□□ 1.03
UPF3A-202ENST00000375299 LCP1P13796 627 aa21.5■■□□□ 1.03
UPF3A-202ENST00000375299 PTPN1P18031 435 aaKnown RBP21.5■■□□□ 1.03
UPF3A-202ENST00000375299 TCN1P20061 433 aaPredicted RBP21.5■■□□□ 1.03
UPF3A-202ENST00000375299 SCNN1AP37088 669 aa21.5■■□□□ 1.03
UPF3A-202ENST00000375299 GALK1P51570 392 aa21.5■■□□□ 1.03
UPF3A-202ENST00000375299 PTK2BQ14289 1009 aa21.5■■□□□ 1.03
UPF3A-202ENST00000375299 SH3D19Q5HYK7 790 aa21.5■■□□□ 1.03
UPF3A-202ENST00000375299 NOL9Q5SY16 702 aaKnown RBP21.5■■□□□ 1.03
UPF3A-202ENST00000375299 LBX2Q6XYB7 198 aa21.5■■□□□ 1.03
UPF3A-202ENST00000375299 TRIM74Q86UV6 250 aa21.5■■□□□ 1.03
UPF3A-202ENST00000375299 TRIM73Q86UV7 250 aa21.5■■□□□ 1.03
UPF3A-202ENST00000375299 TRIML2Q8N7C3 387 aa21.5■■□□□ 1.03
UPF3A-202ENST00000375299 ATP6V1E2Q96A05 226 aa21.5■■□□□ 1.03
UPF3A-202ENST00000375299 VPS39Q96JC1 886 aa21.5■■□□□ 1.03
UPF3A-202ENST00000375299 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP21.5■■□□□ 1.03
UPF3A-202ENST00000375299 COPG1Q9Y678 874 aaKnown RBP21.5■■□□□ 1.03
UPF3A-202ENST00000375299 SCN1AP35498 2009 aa21.5■■□□□ 1.03
UPF3A-202ENST00000375299 TCAF2A6NFQ2 919 aa21.5■■□□□ 1.03
UPF3A-202ENST00000375299 CABYRO75952 493 aa21.5■■□□□ 1.03
UPF3A-202ENST00000375299 CYP2C8P10632 490 aa21.5■■□□□ 1.03
UPF3A-202ENST00000375299 NRF1Q16656 503 aa21.5■■□□□ 1.03
UPF3A-202ENST00000375299 KIZQ2M2Z5 673 aa21.5■■□□□ 1.03
UPF3A-202ENST00000375299 PSTKQ8IV42 348 aaKnown RBP21.5■■□□□ 1.03
UPF3A-202ENST00000375299 ERI1Q8IV48 349 aaKnown RBP21.5■■□□□ 1.03
UPF3A-202ENST00000375299 TMEM151AQ8N4L1 468 aa21.5■■□□□ 1.03
UPF3A-202ENST00000375299 FAM156AQ8NDB6 213 aa21.5■■□□□ 1.03
UPF3A-202ENST00000375299 ASB9Q96DX5 294 aa21.5■■□□□ 1.03
UPF3A-202ENST00000375299 ANKRD6Q9Y2G4 727 aa21.5■■□□□ 1.03
UPF3A-202ENST00000375299 WDR90Q96KV7 1748 aa21.49■■□□□ 1.03
UPF3A-202ENST00000375299 ZSCAN9O15535 394 aaPredicted RBP21.49■■□□□ 1.03
UPF3A-202ENST00000375299 JUNP05412 331 aaKnown RBP21.49■■□□□ 1.03
UPF3A-202ENST00000375299 SBK3P0C264 359 aa21.49■■□□□ 1.03
UPF3A-202ENST00000375299 ALDH3B2P48448 385 aa21.49■■□□□ 1.03
UPF3A-202ENST00000375299 CDK9P50750 372 aaKnown RBP21.49■■□□□ 1.03
UPF3A-202ENST00000375299 COG7P83436 770 aa21.49■■□□□ 1.03
UPF3A-202ENST00000375299 TREML2Q5T2D2 321 aa21.49■■□□□ 1.03
UPF3A-202ENST00000375299 KCNMB4Q86W47 210 aa21.49■■□□□ 1.03
UPF3A-202ENST00000375299 RNF139Q8WU17 664 aa21.49■■□□□ 1.03
UPF3A-202ENST00000375299 LPIN3Q9BQK8 851 aa21.49■■□□□ 1.03
UPF3A-202ENST00000375299 MCMBPQ9BTE3 642 aa21.49■■□□□ 1.03
UPF3A-202ENST00000375299 C1QTNF1Q9BXJ1 281 aa21.49■■□□□ 1.03
UPF3A-202ENST00000375299 COQ10BQ9H8M1 238 aa21.49■■□□□ 1.03
UPF3A-202ENST00000375299 KLHL8Q9P2G9 620 aaPredicted RBP21.49■■□□□ 1.03
UPF3A-202ENST00000375299 ARHGEF37A1IGU5 675 aa21.48■■□□□ 1.03
UPF3A-202ENST00000375299 AP2A1O95782 977 aa21.48■■□□□ 1.03
UPF3A-202ENST00000375299 NAGLUP54802 743 aa21.48■■□□□ 1.03
UPF3A-202ENST00000375299 LPIN1Q14693 890 aa21.48■■□□□ 1.03
UPF3A-202ENST00000375299 KYAT1Q16773 422 aa21.48■■□□□ 1.03
UPF3A-202ENST00000375299 ANO4Q32M45 955 aa21.48■■□□□ 1.03
UPF3A-202ENST00000375299 ARHGAP17Q68EM7 881 aa21.48■■□□□ 1.03
UPF3A-202ENST00000375299 CARM1Q86X55 608 aa21.48■■□□□ 1.03
UPF3A-202ENST00000375299 TRPM4Q8TD43 1214 aa21.48■■□□□ 1.03
UPF3A-202ENST00000375299 MFSD3Q96ES6 412 aa21.48■■□□□ 1.03
UPF3A-202ENST00000375299 KIF12Q96FN5 646 aa21.48■■□□□ 1.03
UPF3A-202ENST00000375299 TSNARE1Q96NA8 513 aa21.48■■□□□ 1.03
UPF3A-202ENST00000375299 OSBPL11Q9BXB4 747 aa21.48■■□□□ 1.03
UPF3A-202ENST00000375299 BRCA1P38398 1863 aaKnown RBP21.48■■□□□ 1.03
UPF3A-202ENST00000375299 H6PDO95479 791 aa21.48■■□□□ 1.03
UPF3A-202ENST00000375299 C8BP07358 591 aa21.48■■□□□ 1.03
UPF3A-202ENST00000375299 CSRP3P50461 194 aa21.48■■□□□ 1.03
UPF3A-202ENST00000375299 TMED1Q13445 227 aa21.48■■□□□ 1.03
UPF3A-202ENST00000375299 RIOX2Q8IUF8 465 aa21.48■■□□□ 1.03
UPF3A-202ENST00000375299 LSMEM2Q8N112 164 aa21.48■■□□□ 1.03
UPF3A-202ENST00000375299 DNAAF3Q8N9W5 541 aa21.48■■□□□ 1.03
UPF3A-202ENST00000375299 CASS4Q9NQ75 786 aa21.48■■□□□ 1.03
UPF3A-202ENST00000375299 C20orf96Q9NUD7 363 aaPredicted RBP21.48■■□□□ 1.03
UPF3A-202ENST00000375299 ADA2Q9NZK5 511 aa21.48■■□□□ 1.03
UPF3A-202ENST00000375299 SUCOQ9UBS9 1254 aaKnown RBP21.48■■□□□ 1.03
UPF3A-202ENST00000375299 SLC39A10Q9ULF5 831 aa21.48■■□□□ 1.03
UPF3A-202ENST00000375299 AP4S1Q9Y587 144 aa21.48■■□□□ 1.03
UPF3A-202ENST00000375299 A0A087WZ62 844 aa21.47■■□□□ 1.03
UPF3A-202ENST00000375299 ARF4P18085 180 aaPredicted RBP21.47■■□□□ 1.03
UPF3A-202ENST00000375299 SULT1E1P49888 294 aa21.47■■□□□ 1.03
UPF3A-202ENST00000375299 BST2Q10589 180 aaKnown RBP21.47■■□□□ 1.03
UPF3A-202ENST00000375299 IKBKEQ14164 716 aa21.47■■□□□ 1.03
UPF3A-202ENST00000375299 CELF3Q5SZQ8 465 aaKnown RBP21.47■■□□□ 1.03
UPF3A-202ENST00000375299 DEFB132Q7Z7B7 95 aa21.47■■□□□ 1.03
UPF3A-202ENST00000375299 NT5DC4Q86YG4 428 aa21.47■■□□□ 1.03
UPF3A-202ENST00000375299 C7orf31Q8N865 590 aa21.47■■□□□ 1.03
UPF3A-202ENST00000375299 ABTB1Q969K4 478 aaPredicted RBP21.47■■□□□ 1.03
UPF3A-202ENST00000375299 PPP1R14BQ96C90 147 aa21.47■■□□□ 1.03
UPF3A-202ENST00000375299 SCYL1Q96KG9 808 aa21.47■■□□□ 1.03
UPF3A-202ENST00000375299 PHF12Q96QT6 1004 aa21.47■■□□□ 1.03
UPF3A-202ENST00000375299 PPP1R16BQ96T49 567 aa21.47■■□□□ 1.03
UPF3A-202ENST00000375299 FDXACB1Q9BRP7 624 aaPredicted RBP21.47■■□□□ 1.03
UPF3A-202ENST00000375299 SEMA6AQ9H2E6 1030 aa21.47■■□□□ 1.03
UPF3A-202ENST00000375299 IARS2Q9NSE4 1012 aaKnown RBP21.47■■□□□ 1.03
UPF3A-202ENST00000375299 TLK1Q9UKI8 766 aa21.47■■□□□ 1.03
UPF3A-202ENST00000375299 PLXNA1Q9UIW2 1896 aa21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms