RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 TERB1Q8NA31 727 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 CENPIQ92674 756 aaPredicted RBP12.8□□□□□ -0.36
SDC3-201ENST00000336798 RELTQ969Z4 430 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 SLC35C2Q9NQQ7 365 aa12.8□□□□□ -0.36
SDC3-201ENST00000336798 RBM7Q9Y580 266 aaKnown RBP12.8□□□□□ -0.36
SDC3-201ENST00000336798 TBL1XO60907 577 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 ZMPSTE24O75844 475 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 RBL1P28749 1068 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 RPL21P46778 160 aaKnown RBP12.79□□□□□ -0.36
SDC3-201ENST00000336798 C15orf59Q2T9L4 293 aaPredicted RBP12.79□□□□□ -0.36
SDC3-201ENST00000336798 ZIK1Q3SY52 487 aaPredicted RBP12.79□□□□□ -0.36
SDC3-201ENST00000336798 KCNT2Q6UVM3 1135 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 NAT16Q8N8M0 369 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 SMYD1Q8NB12 490 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 RORBQ92753 470 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 CXorf40BQ96DE9 158 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 P2RX7Q99572 595 aaKnown RBP12.79□□□□□ -0.36
SDC3-201ENST00000336798 CEP44Q9C0F1 390 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 EURLQ9NYK6 297 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 PLAGL2Q9UPG8 496 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 MAGEB16A2A368 324 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 TCEA3O75764 348 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 IL1BP01584 269 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 PIRTP0C851 137 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 CTPS1P17812 591 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 PTPN4P29074 926 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 CRABP2P29373 138 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 TOB1P50616 345 aaPredicted RBP12.79□□□□□ -0.36
SDC3-201ENST00000336798 ALDH5A1P51649 535 aaPredicted RBP12.79□□□□□ -0.36
SDC3-201ENST00000336798 CAPSLQ8WWF8 208 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 SELENOMQ8WWX9 145 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 LPPQ93052 612 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 OXNAD1Q96HP4 312 aaPredicted RBP12.79□□□□□ -0.36
SDC3-201ENST00000336798 NAT9Q9BTE0 207 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 EPB41L4BQ9H329 900 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 TNFSF13BQ9Y275 285 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 HES2Q9Y543 173 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 CCDC189A1A4V9 331 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 TAF4O00268 1085 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 NCAM2O15394 837 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 AHCYL1O43865 530 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 ACSM2AQ08AH3 577 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 ACSM2BQ68CK6 577 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 RPTNQ6XPR3 784 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 KIAA0408Q6ZU52 694 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 ARMC8Q8IUR7 673 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 ZCCHC7Q8N3Z6 543 aaKnown RBP12.79□□□□□ -0.36
SDC3-201ENST00000336798 C2orf73Q8N5S3 287 aaPredicted RBP12.79□□□□□ -0.36
SDC3-201ENST00000336798 ZDHHC15Q96MV8 337 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 FRMD6Q96NE9 622 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 RTN3O95197 1032 aaPredicted RBP12.79□□□□□ -0.36
SDC3-201ENST00000336798 ATP5BP06576 529 aaKnown RBP12.79□□□□□ -0.36
SDC3-201ENST00000336798 GP5P40197 560 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 LSM3P62310 102 aaKnown RBP12.79□□□□□ -0.36
SDC3-201ENST00000336798 ACVR2BQ13705 512 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 C4orf19Q8IY42 314 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 CHPFQ8IZ52 775 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 EXOC2Q96KP1 924 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 FERD3LQ96RJ6 166 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 ASB8Q9H765 288 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 HMX1Q9NP08 348 aaPredicted RBP12.79□□□□□ -0.36
SDC3-201ENST00000336798 BTRCQ9Y297 605 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 FCHO1O14526 889 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 KCNH1O95259 989 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 SERPINE1P05121 402 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 CTNNB1P35222 781 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 CACNA2D1P54289 1103 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 TBX2Q13207 712 aaPredicted RBP12.79□□□□□ -0.36
SDC3-201ENST00000336798 BHLHE22Q8NFJ8 381 aaPredicted RBP12.79□□□□□ -0.36
SDC3-201ENST00000336798 NEK7Q8TDX7 302 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 LACRTQ9GZZ8 138 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 SLC12A4Q9UP95 1085 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 TMX2Q9Y320 296 aa12.79□□□□□ -0.36
SDC3-201ENST00000336798 PSMB4P28070 264 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 ZC3H12AQ5D1E8 599 aaKnown RBP12.78□□□□□ -0.36
SDC3-201ENST00000336798 ZNF276Q8N554 614 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 PANX3Q96QZ0 392 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 ARHGAP20Q9P2F6 1191 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 EFR3BQ9Y2G0 817 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 C2CD2Q9Y426 696 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 PCDHA3Q9Y5H8 950 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 H3BMM5 538 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 PEX11AO75192 247 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 PRG2P13727 222 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 TCEA1P23193 301 aaKnown RBP12.78□□□□□ -0.36
SDC3-201ENST00000336798 SERPINA4P29622 427 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 RAB27AP51159 221 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 CXCL9Q07325 125 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 ACTRT1Q8TDG2 376 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 C1QTNF7Q9BXJ2 289 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 RTFDC1Q9BY42 306 aaPredicted RBP12.78□□□□□ -0.36
SDC3-201ENST00000336798 FAM126AQ9BYI3 521 aaPredicted RBP12.78□□□□□ -0.36
SDC3-201ENST00000336798 MYLK2Q9H1R3 596 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 MARCH2Q9P0N8 246 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 AKR1A1P14550 325 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 LRPAP1P30533 357 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 PTPAQ15257 358 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 ZNHIT3Q15649 155 aaPredicted RBP12.78□□□□□ -0.36
SDC3-201ENST00000336798 IQCF2Q8IXL9 164 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 KBTBD2Q8IY47 623 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms