RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 RHOJQ9H4E5 214 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 EIF2B3Q9NR50 452 aaKnown RBP6.98□□□□□ -1.29
SF3B1-201ENST00000335508 IGSF9Q9P2J2 1179 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 PALM2-AKAP2B1ALY0 433 aaPredicted RBP6.98□□□□□ -1.29
SF3B1-201ENST00000335508 PRNPP04156 253 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 ENO3P13929 434 aaPredicted RBP6.98□□□□□ -1.29
SF3B1-201ENST00000335508 CPA3P15088 417 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 CNGA3Q16281 694 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 IMPG1Q17R60 797 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 OTOAQ7RTW8 1153 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 KDELC2Q7Z4H8 507 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 ADAMTSL2Q86TH1 951 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 HDAC7Q8WUI4 952 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 SPATA16Q9BXB7 569 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 EPN3Q9H201 632 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 KDM4CQ9H3R0 1056 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 NINJ2Q9NZG7 142 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 CPQQ9Y646 472 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 A0A096LPK6 155 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 CLDN5O00501 218 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 RPN2P04844 631 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 HAPLN1P10915 354 aaPredicted RBP6.98□□□□□ -1.29
SF3B1-201ENST00000335508 COL6A2P12110 1019 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 SSTR1P30872 391 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 ELP6Q0PNE2 266 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 DNAL1Q4LDG9 190 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 C1orf220Q5T0J3 134 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 KCNMB4Q86W47 210 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 SPATA24Q86W54 205 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 TCEAL8Q8IYN2 117 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 EXT2Q93063 718 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 GMIPQ9P107 970 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 FETUBQ9UGM5 382 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 FBXW11Q9UKB1 542 aa6.98□□□□□ -1.29
SF3B1-201ENST00000335508 CREBBPQ92793 2442 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 MTMR11A4FU01 709 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 GYG2O15488 501 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 CLASP2O75122 1294 aaKnown RBP6.97□□□□□ -1.29
SF3B1-201ENST00000335508 SUPT7LO94864 414 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 LMO2P25791 158 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 CCND3P30281 292 aaPredicted RBP6.97□□□□□ -1.29
SF3B1-201ENST00000335508 TPD52P55327 224 aaPredicted RBP6.97□□□□□ -1.29
SF3B1-201ENST00000335508 RPL26P61254 145 aaKnown RBP6.97□□□□□ -1.29
SF3B1-201ENST00000335508 HIST2H2ACQ16777 129 aaPredicted RBP6.97□□□□□ -1.29
SF3B1-201ENST00000335508 HIST2H2AA3Q6FI13 130 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 ART4Q93070 314 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 CMTM5Q96DZ9 223 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 CFHR5Q9BXR6 569 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 SOX13Q9UN79 622 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 RPL26L1Q9UNX3 145 aaKnown RBP6.97□□□□□ -1.29
SF3B1-201ENST00000335508 SORCS3Q9UPU3 1222 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 NCKAP1Q9Y2A7 1128 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 TLR6Q9Y2C9 796 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 PCDHB9Q9Y5E1 797 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 MATN3O15232 486 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 SLC7A4O43246 635 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 ALADP13716 330 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 RAB33AQ14088 237 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 GPR158Q5T848 1215 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 OOSP2Q86WS3 158 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 PEX13Q92968 403 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 CPNE1Q99829 537 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 SMOQ99835 787 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 SCUBE2Q9NQ36 999 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.97□□□□□ -1.29
SF3B1-201ENST00000335508 MEFVO15553 781 aaPredicted RBP6.97□□□□□ -1.29
SF3B1-201ENST00000335508 SERPINE1P05121 402 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 OR4Q2P0C623 313 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 NCF2P19878 526 aaPredicted RBP6.97□□□□□ -1.29
SF3B1-201ENST00000335508 POU4F1Q01851 419 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 SCAPQ12770 1279 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 GRTP1Q5TC63 336 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 TMEM40Q8WWA1 233 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 IL23AQ9NPF7 189 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 HSFX1Q9UBD0 423 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 DCTN4Q9UJW0 460 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 ZMYND8Q9ULU4 1186 aaPredicted RBP6.97□□□□□ -1.29
SF3B1-201ENST00000335508 COG5Q9UP83 839 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 GCATO75600 419 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 LATS1O95835 1130 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 CHN1P15882 459 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 IGFBP4P22692 258 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 SKP1P63208 163 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 MTM1Q13496 603 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 DMC1Q14565 340 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 RASA2Q15283 850 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 ZNF572Q7Z3I7 529 aaPredicted RBP6.97□□□□□ -1.29
SF3B1-201ENST00000335508 CHPFQ8IZ52 775 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 OR2W6PQ8NHA6 318 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 STAG3L4Q8TBR4 150 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 ZNF514Q96K75 400 aaPredicted RBP6.97□□□□□ -1.29
SF3B1-201ENST00000335508 LRGUKQ96M69 825 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 QKIQ96PU8 341 aaKnown RBP eCLIP6.97□□□□□ -1.293e-6■□□□□ 10.1
SF3B1-201ENST00000335508 KLF6Q99612 283 aaPredicted RBP6.97□□□□□ -1.29
SF3B1-201ENST00000335508 TRIM45Q9H8W5 580 aaPredicted RBP6.97□□□□□ -1.29
SF3B1-201ENST00000335508 TMBIM4Q9HC24 238 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 CFAP97Q9P2B7 532 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 CPSF2Q9P2I0 782 aaKnown RBP6.97□□□□□ -1.29
SF3B1-201ENST00000335508 SALL4Q9UJQ4 1053 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 SCML2Q9UQR0 700 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms