RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 CEP76Q8TAP6 659 aa3.17□□□□□ -1.9
SCN1A-208ENST00000625916 ADGRG7Q96K78 797 aa3.17□□□□□ -1.9
SCN1A-208ENST00000625916 COLEC11Q9BWP8 271 aa3.17□□□□□ -1.9
SCN1A-208ENST00000625916 TMEM120AQ9BXJ8 343 aa3.17□□□□□ -1.9
SCN1A-208ENST00000625916 KRTAP4-4Q9BYR3 166 aa3.17□□□□□ -1.9
SCN1A-208ENST00000625916 IL25Q9H293 177 aa3.17□□□□□ -1.9
SCN1A-208ENST00000625916 HIPK3Q9H422 1215 aa3.17□□□□□ -1.9
SCN1A-208ENST00000625916 CCDC134Q9H6E4 229 aa3.17□□□□□ -1.9
SCN1A-208ENST00000625916 DTNAQ9Y4J8 743 aa3.17□□□□□ -1.9
SCN1A-208ENST00000625916 TCRBV7S3A2A0A539 114 aa3.16□□□□□ -1.9
SCN1A-208ENST00000625916 TSPAN6O43657 245 aa3.16□□□□□ -1.9
SCN1A-208ENST00000625916 LMX1BO60663 402 aa3.16□□□□□ -1.9
SCN1A-208ENST00000625916 S100BP04271 92 aaPredicted RBP3.16□□□□□ -1.9
SCN1A-208ENST00000625916 CYP3A4P08684 503 aa3.16□□□□□ -1.9
SCN1A-208ENST00000625916 C21orf33P30042 268 aaPredicted RBP3.16□□□□□ -1.9
SCN1A-208ENST00000625916 THPOP40225 353 aa3.16□□□□□ -1.9
SCN1A-208ENST00000625916 CASP5P51878 434 aa3.16□□□□□ -1.9
SCN1A-208ENST00000625916 CDH12P55289 794 aa3.16□□□□□ -1.9
SCN1A-208ENST00000625916 RNASELQ05823 741 aaKnown RBP3.16□□□□□ -1.9
SCN1A-208ENST00000625916 GRM4Q14833 912 aa3.16□□□□□ -1.9
SCN1A-208ENST00000625916 SF3B4Q15427 424 aaKnown RBP eCLIP3.16□□□□□ -1.9
SCN1A-208ENST00000625916 ARL13BQ3SXY8 428 aa3.16□□□□□ -1.9
SCN1A-208ENST00000625916 ZNF569Q5MCW4 686 aa3.16□□□□□ -1.9
SCN1A-208ENST00000625916 HIST2H2BCQ6DN03 193 aa3.16□□□□□ -1.9
SCN1A-208ENST00000625916 CYB5RLQ6IPT4 315 aa3.16□□□□□ -1.9
SCN1A-208ENST00000625916 ADAM5Q6NVV9 412 aa3.16□□□□□ -1.9
SCN1A-208ENST00000625916 SLC30A9Q6PML9 568 aa3.16□□□□□ -1.9
SCN1A-208ENST00000625916 MON1BQ7L1V2 547 aa3.16□□□□□ -1.9
SCN1A-208ENST00000625916 TRABD2AQ86V40 505 aa3.16□□□□□ -1.9
SCN1A-208ENST00000625916 EXOC3L1Q86VI1 746 aa3.16□□□□□ -1.9
SCN1A-208ENST00000625916 TMEM200AQ86VY9 491 aa3.16□□□□□ -1.9
SCN1A-208ENST00000625916 LMNTD1Q8N9Z9 388 aa3.16□□□□□ -1.9
SCN1A-208ENST00000625916 FAM110DQ8TAY7 271 aaPredicted RBP3.16□□□□□ -1.9
SCN1A-208ENST00000625916 WDR60Q8WVS4 1066 aa3.16□□□□□ -1.9
SCN1A-208ENST00000625916 SLC25A33Q9BSK2 321 aa3.16□□□□□ -1.9
SCN1A-208ENST00000625916 SORBS1Q9BX66 1292 aaKnown RBP3.16□□□□□ -1.9
SCN1A-208ENST00000625916 FRMD8Q9BZ67 464 aaPredicted RBP3.16□□□□□ -1.9
SCN1A-208ENST00000625916 ZDHHC7Q9NXF8 308 aa3.16□□□□□ -1.9
SCN1A-208ENST00000625916 MALT1Q9UDY8 824 aa3.16□□□□□ -1.9
SCN1A-208ENST00000625916 ZBTB1Q9Y2K1 713 aa3.16□□□□□ -1.9
SCN1A-208ENST00000625916 COPG1Q9Y678 874 aaKnown RBP3.16□□□□□ -1.9
SCN1A-208ENST00000625916 IGLV5-52A0A0A0MRZ9 124 aa3.15□□□□□ -1.91
SCN1A-208ENST00000625916 ITM2AO43736 263 aa3.15□□□□□ -1.91
SCN1A-208ENST00000625916 TMCC1O94876 653 aa3.15□□□□□ -1.91
SCN1A-208ENST00000625916 SOX30O94993 753 aa3.15□□□□□ -1.91
SCN1A-208ENST00000625916 MYZAPP0CAP1 466 aa3.15□□□□□ -1.91
SCN1A-208ENST00000625916 UNGP13051 313 aaPredicted RBP3.15□□□□□ -1.91
SCN1A-208ENST00000625916 BNC1Q01954 994 aa3.15□□□□□ -1.91
SCN1A-208ENST00000625916 ZBTB16Q05516 673 aa3.15□□□□□ -1.91
SCN1A-208ENST00000625916 PLEKHG6Q3KR16 790 aa3.15□□□□□ -1.91
SCN1A-208ENST00000625916 EFHC1Q5JVL4 640 aa3.15□□□□□ -1.91
SCN1A-208ENST00000625916 LCE1FQ5T754 118 aa3.15□□□□□ -1.91
SCN1A-208ENST00000625916 STPG1Q5TH74 334 aa3.15□□□□□ -1.91
SCN1A-208ENST00000625916 FAM171A1Q5VUB5 890 aa3.15□□□□□ -1.91
SCN1A-208ENST00000625916 PMS2CLQ68D20 193 aa3.15□□□□□ -1.91
SCN1A-208ENST00000625916 DCUN1D3Q8IWE4 304 aa3.15□□□□□ -1.91
SCN1A-208ENST00000625916 POC1AQ8NBT0 407 aa3.15□□□□□ -1.91
SCN1A-208ENST00000625916 JDP2Q8WYK2 163 aa3.15□□□□□ -1.91
SCN1A-208ENST00000625916 TTC17Q96AE7 1141 aa3.15□□□□□ -1.91
SCN1A-208ENST00000625916 GDF15Q99988 308 aa3.15□□□□□ -1.91
SCN1A-208ENST00000625916 RAI2Q9Y5P3 530 aa3.15□□□□□ -1.91
SCN1A-208ENST00000625916 SAA2-SAA4A0A096LPE2 208 aa3.14□□□□□ -1.91
SCN1A-208ENST00000625916 IGHV4-28A0A0C4DH34 117 aa3.14□□□□□ -1.91
SCN1A-208ENST00000625916 ANTXRLA6NF34 631 aa3.14□□□□□ -1.91
SCN1A-208ENST00000625916 PCDH17O14917 1159 aa3.14□□□□□ -1.91
SCN1A-208ENST00000625916 RPP40O75818 363 aaKnown RBP3.14□□□□□ -1.91
SCN1A-208ENST00000625916 NTSR2O95665 410 aa3.14□□□□□ -1.91
SCN1A-208ENST00000625916 GLP2RO95838 553 aa3.14□□□□□ -1.91
SCN1A-208ENST00000625916 ANXA6P08133 673 aa3.14□□□□□ -1.91
SCN1A-208ENST00000625916 HARSP12081 509 aaKnown RBP3.14□□□□□ -1.91
SCN1A-208ENST00000625916 PRIM2P49643 509 aa3.14□□□□□ -1.91
SCN1A-208ENST00000625916 FAM3BP58499 235 aaPredicted RBP3.14□□□□□ -1.91
SCN1A-208ENST00000625916 RBM6P78332 1123 aaKnown RBP3.14□□□□□ -1.91
SCN1A-208ENST00000625916 SNTA1Q13424 505 aa3.14□□□□□ -1.91
SCN1A-208ENST00000625916 PMS2P11Q13670 270 aa3.14□□□□□ -1.91
SCN1A-208ENST00000625916 PLK5Q496M5 336 aa3.14□□□□□ -1.91
SCN1A-208ENST00000625916 DGKHQ86XP1 1220 aa3.14□□□□□ -1.91
SCN1A-208ENST00000625916 SPATA20Q8TB22 786 aa3.14□□□□□ -1.91
SCN1A-208ENST00000625916 CLEC4CQ8WTT0 213 aa3.14□□□□□ -1.91
SCN1A-208ENST00000625916 TIFAQ96CG3 184 aa3.14□□□□□ -1.91
SCN1A-208ENST00000625916 TXNDC15Q96J42 360 aa3.14□□□□□ -1.91
SCN1A-208ENST00000625916 IL17FQ96PD4 163 aa3.14□□□□□ -1.91
SCN1A-208ENST00000625916 ABHD16BQ9H3Z7 469 aa3.14□□□□□ -1.91
SCN1A-208ENST00000625916 CDH22Q9UJ99 828 aa3.14□□□□□ -1.91
SCN1A-208ENST00000625916 AGO1Q9UL18 857 aaKnown RBP3.14□□□□□ -1.91
SCN1A-208ENST00000625916 NFU1Q9UMS0 254 aa3.14□□□□□ -1.91
SCN1A-208ENST00000625916 PKP3Q9Y446 797 aa3.14□□□□□ -1.91
SCN1A-208ENST00000625916 ERI2A8K979 691 aaKnown RBP3.13□□□□□ -1.91
SCN1A-208ENST00000625916 KIF28PB7ZC32 967 aa3.13□□□□□ -1.91
SCN1A-208ENST00000625916 EYA2O00167 538 aa3.13□□□□□ -1.91
SCN1A-208ENST00000625916 CLGNO14967 610 aa3.13□□□□□ -1.91
SCN1A-208ENST00000625916 ENO3P13929 434 aaPredicted RBP3.13□□□□□ -1.91
SCN1A-208ENST00000625916 AMD1P17707 334 aa3.13□□□□□ -1.91
SCN1A-208ENST00000625916 GM2AP17900 193 aa3.13□□□□□ -1.91
SCN1A-208ENST00000625916 AKT1P31749 480 aa3.13□□□□□ -1.91
SCN1A-208ENST00000625916 TAF6P49848 677 aa3.13□□□□□ -1.91
SCN1A-208ENST00000625916 PEX5P50542 639 aa3.13□□□□□ -1.91
SCN1A-208ENST00000625916 OAZ1P54368 228 aa3.13□□□□□ -1.91
SCN1A-208ENST00000625916 ALDH18A1P54886 795 aaKnown RBP3.13□□□□□ -1.91
SCN1A-208ENST00000625916 C5orf22Q49AR2 442 aa3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms