RNA–Protein interactions for RNA: ENST00000620996.4

VTA1-205, Transcript of vesicle trafficking 1, humanhuman

TSL 3 BASIC

Gene VTA1, Length 3,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1-205ENST00000620996 SMPD4Q9NXE4 827 aa10.14□□□□□ -0.79
VTA1-205ENST00000620996 SLC17A7Q9P2U7 560 aa10.14□□□□□ -0.79
VTA1-205ENST00000620996 IPO11Q9UI26 975 aaKnown RBP10.14□□□□□ -0.79
VTA1-205ENST00000620996 TBX21Q9UL17 535 aa10.14□□□□□ -0.79
VTA1-205ENST00000620996 SHROOM3Q8TF72 1996 aa10.14□□□□□ -0.79
VTA1-205ENST00000620996 KIAA0100Q14667 2235 aaKnown RBP10.14□□□□□ -0.79
VTA1-205ENST00000620996 NLRC5Q86WI3 1866 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 COPEO14579 308 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 KRT38O76015 456 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 SNRPAP09012 282 aaKnown RBP10.13□□□□□ -0.79
VTA1-205ENST00000620996 ABCG1P45844 678 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 TUFMP49411 452 aaKnown RBP10.13□□□□□ -0.79
VTA1-205ENST00000620996 MNX1P50219 401 aaPredicted RBP10.13□□□□□ -0.79
VTA1-205ENST00000620996 CRYMQ14894 314 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 TRIP4Q15650 581 aaPredicted RBP10.13□□□□□ -0.79
VTA1-205ENST00000620996 FBXL22Q6P050 247 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 CCDC121Q6ZUS5 278 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 TRIM74Q86UV6 250 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 TRIM73Q86UV7 250 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 ARHGAP12Q8IWW6 846 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 LGI2Q8N0V4 545 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 IGSF8Q969P0 613 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 SPDL1Q96EA4 605 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 HMCESQ96FZ2 354 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 BTN2A3PQ96KV6 586 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 TOX2Q96NM4 488 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 ZNF317Q96PQ6 595 aaPredicted RBP10.13□□□□□ -0.79
VTA1-205ENST00000620996 FAM111AQ96PZ2 611 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 VN1R3Q9BXE9 311 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 CWH43Q9H720 699 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 MTRRQ9UBK8 725 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 VWA8A3KMH1 1905 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 TTC24A2A3L6 582 aaPredicted RBP10.13□□□□□ -0.79
VTA1-205ENST00000620996 SEC24AO95486 1093 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 SAT1P21673 171 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 POU6F1Q14863 301 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 SLC25A41Q8N5S1 370 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 LZTR1Q8N653 840 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 ARMC2Q8NEN0 867 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 NSMCE1Q8WV22 266 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 OXNAD1Q96HP4 312 aaPredicted RBP10.13□□□□□ -0.79
VTA1-205ENST00000620996 ZBED2Q9BTP6 218 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 PITPNM3Q9BZ71 974 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 EIF2B3Q9NR50 452 aaKnown RBP10.13□□□□□ -0.79
VTA1-205ENST00000620996 CLIC5Q9NZA1 410 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 GJB5O95377 273 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 HLA-DQB2P05538 268 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 MLNP12872 115 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 ITGB8P26012 769 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 OR1E1P30953 314 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 FOXN2P32314 431 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 ATP5C1P36542 298 aaKnown RBP10.13□□□□□ -0.79
VTA1-205ENST00000620996 PDE1BQ01064 536 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 VEPH1Q14D04 833 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 MSANTD2Q6P1R3 559 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 DENND1CQ8IV53 801 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 CNTD1Q8N815 330 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 MAGEB18Q96M61 343 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 VAT1Q99536 393 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 CLSTN3Q9BQT9 956 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 SPON2Q9BUD6 331 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 PLAC1Q9HBJ0 212 aa10.13□□□□□ -0.79
VTA1-205ENST00000620996 F5H5T6 163 aa10.12□□□□□ -0.79
VTA1-205ENST00000620996 J3KR12 359 aa10.12□□□□□ -0.79
VTA1-205ENST00000620996 TSPAN3O60637 253 aa10.12□□□□□ -0.79
VTA1-205ENST00000620996 CCNCP24863 283 aa10.12□□□□□ -0.79
VTA1-205ENST00000620996 MAGEA3P43357 314 aa10.12□□□□□ -0.79
VTA1-205ENST00000620996 SMARCB1Q12824 385 aa10.12□□□□□ -0.79
VTA1-205ENST00000620996 DNAJC14Q6Y2X3 702 aaPredicted RBP10.12□□□□□ -0.79
VTA1-205ENST00000620996 BHMTQ93088 406 aa10.12□□□□□ -0.79
VTA1-205ENST00000620996 SLC39A13Q96H72 371 aa10.12□□□□□ -0.79
VTA1-205ENST00000620996 SPATA17Q96L03 361 aa10.12□□□□□ -0.79
VTA1-205ENST00000620996 DHRS4Q9BTZ2 278 aa10.12□□□□□ -0.79
VTA1-205ENST00000620996 LRRC40Q9H9A6 602 aa10.12□□□□□ -0.79
VTA1-205ENST00000620996 GKN1Q9NS71 199 aa10.12□□□□□ -0.79
VTA1-205ENST00000620996 TRPM5Q9NZQ8 1165 aa10.12□□□□□ -0.79
VTA1-205ENST00000620996 MCM8Q9UJA3 840 aa10.12□□□□□ -0.79
VTA1-205ENST00000620996 DNMT3LQ9UJW3 386 aa10.12□□□□□ -0.79
VTA1-205ENST00000620996 NEU3Q9UQ49 428 aa10.12□□□□□ -0.79
VTA1-205ENST00000620996 PTPRDP23468 1912 aa10.12□□□□□ -0.79
VTA1-205ENST00000620996 CCDC195A0A1B0GUA6 201 aa10.12□□□□□ -0.79
VTA1-205ENST00000620996 PRPF4O43172 522 aaKnown RBP eCLIP10.12□□□□□ -0.79
VTA1-205ENST00000620996 MAFKO60675 156 aa10.12□□□□□ -0.79
VTA1-205ENST00000620996 RAMP2O60895 175 aa10.12□□□□□ -0.79
VTA1-205ENST00000620996 ZWINTO95229 277 aa10.12□□□□□ -0.79
VTA1-205ENST00000620996 HARS2P49590 506 aaKnown RBP10.12□□□□□ -0.79
VTA1-205ENST00000620996 TWF1Q12792 350 aa10.12□□□□□ -0.79
VTA1-205ENST00000620996 MFSD4BQ5TF39 518 aa10.12□□□□□ -0.79
VTA1-205ENST00000620996 NAPEPLDQ6IQ20 393 aa10.12□□□□□ -0.79
VTA1-205ENST00000620996 TIGD7Q6NT04 549 aaPredicted RBP10.12□□□□□ -0.79
VTA1-205ENST00000620996 NDUFAF2Q8N183 169 aa10.12□□□□□ -0.79
VTA1-205ENST00000620996 CRIPAKQ8N1N5 446 aa10.12□□□□□ -0.79
VTA1-205ENST00000620996 MICAL1Q8TDZ2 1067 aa10.12□□□□□ -0.79
VTA1-205ENST00000620996 C2orf15Q8WU43 125 aaKnown RBP10.12□□□□□ -0.79
VTA1-205ENST00000620996 TOP1MTQ969P6 601 aa10.12□□□□□ -0.79
VTA1-205ENST00000620996 PSMG2Q969U7 264 aa10.12□□□□□ -0.79
VTA1-205ENST00000620996 MFSD3Q96ES6 412 aa10.12□□□□□ -0.79
VTA1-205ENST00000620996 ZNF333Q96JL9 665 aa10.12□□□□□ -0.79
VTA1-205ENST00000620996 SH3GL3Q99963 347 aa10.12□□□□□ -0.79
VTA1-205ENST00000620996 GORASP1Q9BQQ3 440 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms