RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 PRSS16Q9NQE7 514 aa11.36□□□□□ -0.59
LIG1-211ENST00000596457 TMEM248Q9NWD8 314 aa11.36□□□□□ -0.59
LIG1-211ENST00000596457 IMPACTQ9P2X3 320 aa11.36□□□□□ -0.59
LIG1-211ENST00000596457 GMEB2Q9UKD1 530 aa11.36□□□□□ -0.59
LIG1-211ENST00000596457 CYP8B1Q9UNU6 501 aa11.36□□□□□ -0.59
LIG1-211ENST00000596457 PCDHA13Q9Y5I0 950 aa11.36□□□□□ -0.59
LIG1-211ENST00000596457 CEP192Q8TEP8 1941 aa11.36□□□□□ -0.59
LIG1-211ENST00000596457 DNAH14Q0VDD8 3507 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 USP24Q9UPU5 2620 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 EDDM13A0A1B0GTR0 161 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 GOLGA6L3A6NEY3 463 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 LRP3O75074 770 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 SIN3BO75182 1162 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 PROSCO94903 275 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 MT-CO1P00395 513 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 RARAP10276 462 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 VAV1P15498 845 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 GOT1P17174 413 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 BCKDHBP21953 392 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 MAPKAPK2P49137 400 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 KRT81Q14533 505 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 POLD3Q15054 466 aaPredicted RBP11.35□□□□□ -0.59
LIG1-211ENST00000596457 ATP13A4Q4VNC1 1196 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 BOLA3Q53S33 107 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 TXNRD3NBQ6F5E7 133 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 LAIR1Q6GTX8 287 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 RAD9BQ6WBX8 426 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 CYP4V2Q6ZWL3 525 aaPredicted RBP11.35□□□□□ -0.59
LIG1-211ENST00000596457 FAM124AQ86V42 546 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 RHOT2Q8IXI1 618 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 STK40Q8N2I9 435 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 NIPA2Q8N8Q9 360 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 NETO2Q8NC67 525 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 OR2T3Q8NH03 318 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 GANCQ8TET4 914 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 MYO19Q96H55 970 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 CELF6Q96J87 481 aaKnown RBP11.35□□□□□ -0.59
LIG1-211ENST00000596457 SPACA7Q96KW9 195 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 MRGPRX1Q96LB2 322 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 BAG1Q99933 345 aaPredicted RBP11.35□□□□□ -0.59
LIG1-211ENST00000596457 C2orf49Q9BVC5 232 aaPredicted RBP11.35□□□□□ -0.59
LIG1-211ENST00000596457 MKRN2Q9H000 416 aaKnown RBP11.35□□□□□ -0.59
LIG1-211ENST00000596457 CD93Q9NPY3 652 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.35□□□□□ -0.59
LIG1-211ENST00000596457 KLHL11Q9NVR0 708 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 ZNF212Q9UDV6 495 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 VPS51Q9UID3 782 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 HPCAL4Q9UM19 191 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 SMG5Q9UPR3 1016 aaKnown RBP11.35□□□□□ -0.59
LIG1-211ENST00000596457 OR51B4Q9Y5P0 310 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 ACTL7AQ9Y615 435 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 EPN1Q9Y6I3 576 aaPredicted RBP11.35□□□□□ -0.59
LIG1-211ENST00000596457 THADAQ6YHU6 1953 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 DMDP11532 3685 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 CKAP5Q14008 2032 aa11.35□□□□□ -0.59
LIG1-211ENST00000596457 FASNP49327 2511 aaKnown RBP11.34□□□□□ -0.59
LIG1-211ENST00000596457 EIF3CLB5ME19 914 aaKnown RBP11.34□□□□□ -0.59
LIG1-211ENST00000596457 H3BRJ5 948 aa11.34□□□□□ -0.59
LIG1-211ENST00000596457 K7ERQ8 282 aa11.34□□□□□ -0.59
LIG1-211ENST00000596457 FGF10O15520 208 aaPredicted RBP11.34□□□□□ -0.59
LIG1-211ENST00000596457 FOXD2O60548 495 aaPredicted RBP11.34□□□□□ -0.59
LIG1-211ENST00000596457 RAMP2O60895 175 aa11.34□□□□□ -0.59
LIG1-211ENST00000596457 RNASEH1O60930 286 aaKnown RBP11.34□□□□□ -0.59
LIG1-211ENST00000596457 NDUFA10O95299 355 aa11.34□□□□□ -0.59
LIG1-211ENST00000596457 IPO7O95373 1038 aaKnown RBP11.34□□□□□ -0.59
LIG1-211ENST00000596457 DNTTP04053 509 aa11.34□□□□□ -0.59
LIG1-211ENST00000596457 SRCP12931 536 aa11.34□□□□□ -0.59
LIG1-211ENST00000596457 AMPD1P23109 780 aa11.34□□□□□ -0.59
LIG1-211ENST00000596457 ARL4AP40617 200 aa11.34□□□□□ -0.59
LIG1-211ENST00000596457 DNA2P51530 1060 aa11.34□□□□□ -0.59
LIG1-211ENST00000596457 COPAP53621 1224 aa11.34□□□□□ -0.59
LIG1-211ENST00000596457 NAP1L1P55209 391 aaKnown RBP11.34□□□□□ -0.59
LIG1-211ENST00000596457 CDH6P55285 790 aa11.34□□□□□ -0.59
LIG1-211ENST00000596457 TAS2R40P59535 323 aa11.34□□□□□ -0.59
LIG1-211ENST00000596457 SEMA3BQ13214 749 aa11.34□□□□□ -0.59
LIG1-211ENST00000596457 CAMK2GQ13555 558 aaPredicted RBP11.34□□□□□ -0.59
LIG1-211ENST00000596457 BYSLQ13895 437 aaKnown RBP11.34□□□□□ -0.59
LIG1-211ENST00000596457 DLG2Q15700 870 aa11.34□□□□□ -0.59
LIG1-211ENST00000596457 HNRNPA1L2Q32P51 320 aaKnown RBP11.34□□□□□ -0.59
LIG1-211ENST00000596457 ZNF783Q6ZMS7 281 aa11.34□□□□□ -0.59
LIG1-211ENST00000596457 RFX8Q6ZV50 586 aa11.34□□□□□ -0.59
LIG1-211ENST00000596457 ARMCX6Q7L4S7 300 aa11.34□□□□□ -0.59
LIG1-211ENST00000596457 SH2D3CQ8N5H7 860 aa11.34□□□□□ -0.59
LIG1-211ENST00000596457 RTL3Q8N8U3 475 aaKnown RBP11.34□□□□□ -0.59
LIG1-211ENST00000596457 KCTD6Q8NC69 237 aa11.34□□□□□ -0.59
LIG1-211ENST00000596457 ACRBPQ8NEB7 543 aa11.34□□□□□ -0.59
LIG1-211ENST00000596457 RFFLQ8WZ73 363 aa11.34□□□□□ -0.59
LIG1-211ENST00000596457 PTPRN2Q92932 1015 aa11.34□□□□□ -0.59
LIG1-211ENST00000596457 ARHGEF2Q92974 986 aaKnown RBP11.34□□□□□ -0.59
LIG1-211ENST00000596457 EIF3CQ99613 913 aaKnown RBP11.34□□□□□ -0.59
LIG1-211ENST00000596457 MAGEH1Q9H213 219 aa11.34□□□□□ -0.59
LIG1-211ENST00000596457 TNKS2Q9H2K2 1166 aa11.34□□□□□ -0.59
LIG1-211ENST00000596457 GRPEL1Q9HAV7 217 aa11.34□□□□□ -0.59
LIG1-211ENST00000596457 CD248Q9HCU0 757 aa11.34□□□□□ -0.59
LIG1-211ENST00000596457 LUC7LQ9NQ29 371 aaKnown RBP11.34□□□□□ -0.59
LIG1-211ENST00000596457 CWC15Q9P013 229 aaKnown RBP11.34□□□□□ -0.59
LIG1-211ENST00000596457 INTUQ9ULD6 942 aa11.34□□□□□ -0.59
LIG1-211ENST00000596457 NEU3Q9UQ49 428 aa11.34□□□□□ -0.59
LIG1-211ENST00000596457 HYOU1Q9Y4L1 999 aa11.34□□□□□ -0.59
LIG1-211ENST00000596457 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms