RNA–Protein interactions for RNA: ENST00000562298.1

VPS9D1-AS1-201, VPS9D1 antisense RNA 1, humanhuman

TSL 1 (best)

Gene VPS9D1-AS1, Length 931 nt, Biotype antisense RNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-AS1-201ENST00000562298 VPS28Q9UK41 221 aa17.16■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 TBC1D30Q9Y2I9 924 aa17.16■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 ATRXP46100 2492 aa17.16■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.15■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 MCF2LO15068 1137 aa17.15■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 ALOX15BO15296 676 aa17.15■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 CLDN11O75508 207 aa17.15■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 RFPL3O75679 317 aa17.15■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 CNTN5O94779 1100 aa17.15■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 TFE3P19532 575 aaPredicted RBP17.15■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 NOS2P35228 1153 aa17.15■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 RXRGP48443 463 aa17.15■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 ACADVLP49748 655 aa17.15■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 TAS2R38P59533 333 aa17.15■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 SLC6A3Q01959 620 aa17.15■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 PTK2Q05397 1052 aa17.15■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 ZNF177Q13360 481 aaPredicted RBP17.15■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 SFMBT2Q5VUG0 894 aa17.15■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 FAM46CQ5VWP2 391 aa17.15■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 SLC26A9Q7LBE3 791 aa17.15■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 KANSL1Q7Z3B3 1105 aa17.15■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 PRPF39Q86UA1 669 aaKnown RBP17.15■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 TRIM69Q86WT6 500 aa17.15■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 PIP4K2CQ8TBX8 421 aa17.15■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 TSC1Q92574 1164 aa17.15■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 NOX5Q96PH1 765 aa17.15■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 PSMB7Q99436 277 aa17.15■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 NPY6RQ99463 290 aa17.15■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 DNAJC12Q9UKB3 198 aa17.15■□□□□ 0.34
VPS9D1-AS1-201ENST00000562298 C1QTNF3-AMACRE9PGA6 284 aa17.14■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 FOXN3O00409 490 aaPredicted RBP17.14■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 ADCY5O95622 1261 aa17.14■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 MT-CO1P00395 513 aa17.14■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 CTSLP07711 333 aa17.14■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 SRCP12931 536 aa17.14■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 CDH4P55283 916 aa17.14■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 MTA1Q13330 715 aa17.14■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 SOWAHCQ53LP3 525 aaPredicted RBP17.14■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 ALFQ53S48 1182 aa17.14■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 ZNF683Q8IZ20 524 aa17.14■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 ZNF397Q8NF99 534 aaPredicted RBP17.14■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 PPP1R9BQ96SB3 815 aa17.14■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 SIK2Q9H0K1 926 aa17.14■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 ARHGEF38Q9NXL2 777 aa17.14■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 DMTF1Q9Y222 760 aa17.14■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 HS3ST2Q9Y278 367 aa17.14■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 CA5BQ9Y2D0 317 aa17.14■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 APC2O95996 2303 aa17.14■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 A0A087WV48 116 aa17.13■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 RNF103O00237 685 aa17.13■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 BNIP3LO60238 219 aa17.13■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 SNAP91O60641 907 aa17.13■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 KRT9P35527 623 aa17.13■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 CXCR3P49682 368 aa17.13■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 PIP5KL1Q5T9C9 394 aa17.13■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 DPY19L2P1Q6NXN4 242 aa17.13■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 IQCHQ86VS3 1027 aa17.13■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 OXR1Q8N573 874 aa17.13■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 NT5C3BQ969T7 300 aa17.13■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 LRIG1Q96JA1 1093 aa17.13■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 TKTL2Q9H0I9 626 aa17.13■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 MUC3BQ9H195 1237 aa17.13■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 SYNCQ9H7C4 482 aa17.13■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 SNX10Q9Y5X0 201 aa17.13■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 E9PAM4 449 aa17.12■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 K7ERQ8 282 aa17.12■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 SDC3O75056 442 aa17.12■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 C1SP09871 688 aa17.12■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 ZNF18P17022 549 aa17.12■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 NUDT1P36639 197 aa17.12■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 MTIF2P46199 727 aaKnown RBP17.12■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 OVGP1Q12889 678 aa17.12■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 ACAP1Q15027 740 aa17.12■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 SETMARQ53H47 684 aaPredicted RBP17.12■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 BRMS1LQ5PSV4 323 aa17.12■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 ARTNQ5T4W7 220 aa17.12■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 SMYD5Q6GMV2 418 aa17.12■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 FBXL19Q6PCT2 694 aa17.12■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 ZDHHC17Q8IUH5 632 aa17.12■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 FAM71AQ8IYT1 594 aa17.12■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 OR2A12Q8NGT7 310 aa17.12■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 CRELD1Q96HD1 420 aa17.12■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 WDCPQ9H6R7 721 aa17.12■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 PREBQ9HCU5 417 aa17.12■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 TMPRSS4Q9NRS4 437 aa17.12■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP17.12■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 VPS51Q9UID3 782 aa17.12■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 DOCK9Q9BZ29 2069 aa17.12■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 A0A0D9SEW6 157 aa17.11■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 FAM170AA1A519 330 aa17.11■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 PRAMEF26H0Y7S4 382 aa17.11■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 SMAD6O43541 496 aaKnown RBP17.11■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 RHOCP08134 193 aa17.11■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 CDK4P11802 303 aa17.11■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 JUPP14923 745 aa17.11■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 CDH5P33151 784 aaPredicted RBP17.11■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 HNF1BP35680 557 aa17.11■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 SULT1E1P49888 294 aa17.11■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 SNX16P57768 344 aa17.11■□□□□ 0.33
VPS9D1-AS1-201ENST00000562298 RNASE9P60153 205 aaKnown RBP17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms