RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 CCDC114Q96M63 670 aa12.79□□□□□ -0.36
SLIRP-209ENST00000557342 SPON2Q9BUD6 331 aa12.79□□□□□ -0.36
SLIRP-209ENST00000557342 SNRNP25Q9BV90 132 aaKnown RBP12.79□□□□□ -0.36
SLIRP-209ENST00000557342 MAGEB5Q9BZ81 275 aa12.79□□□□□ -0.36
SLIRP-209ENST00000557342 ARRDC1-AS1Q9H2J1 176 aa12.79□□□□□ -0.36
SLIRP-209ENST00000557342 DHX35Q9H5Z1 703 aaKnown RBP12.79□□□□□ -0.36
SLIRP-209ENST00000557342 CTTNBP2NLQ9P2B4 639 aa12.79□□□□□ -0.36
SLIRP-209ENST00000557342 DNAI1Q9UI46 699 aa12.79□□□□□ -0.36
SLIRP-209ENST00000557342 VPS51Q9UID3 782 aa12.79□□□□□ -0.36
SLIRP-209ENST00000557342 HPCAL4Q9UM19 191 aa12.79□□□□□ -0.36
SLIRP-209ENST00000557342 MYO15AQ9UKN7 3530 aa12.79□□□□□ -0.36
SLIRP-209ENST00000557342 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.78□□□□□ -0.36
SLIRP-209ENST00000557342 CBX4O00257 560 aa12.78□□□□□ -0.36
SLIRP-209ENST00000557342 EEF2KO00418 725 aaKnown RBP12.78□□□□□ -0.36
SLIRP-209ENST00000557342 SNAP91O60641 907 aa12.78□□□□□ -0.36
SLIRP-209ENST00000557342 SRCP12931 536 aa12.78□□□□□ -0.36
SLIRP-209ENST00000557342 DHPSP49366 369 aaPredicted RBP12.78□□□□□ -0.36
SLIRP-209ENST00000557342 NUMBP49757 651 aa12.78□□□□□ -0.36
SLIRP-209ENST00000557342 GEMIN4P57678 1058 aaKnown RBP12.78□□□□□ -0.36
SLIRP-209ENST00000557342 YBEYP58557 167 aaPredicted RBP12.78□□□□□ -0.36
SLIRP-209ENST00000557342 CREB5Q02930 508 aa12.78□□□□□ -0.36
SLIRP-209ENST00000557342 SPEM2Q0P670 501 aa12.78□□□□□ -0.36
SLIRP-209ENST00000557342 ELAVL3Q14576 367 aaKnown RBP12.78□□□□□ -0.36
SLIRP-209ENST00000557342 POLD3Q15054 466 aaPredicted RBP12.78□□□□□ -0.36
SLIRP-209ENST00000557342 DLG2Q15700 870 aa12.78□□□□□ -0.36
SLIRP-209ENST00000557342 CSRP2Q16527 193 aa12.78□□□□□ -0.36
SLIRP-209ENST00000557342 HADHQ16836 314 aaKnown RBP12.78□□□□□ -0.36
SLIRP-209ENST00000557342 BOLA3Q53S33 107 aa12.78□□□□□ -0.36
SLIRP-209ENST00000557342 DSG4Q86SJ6 1040 aa12.78□□□□□ -0.36
SLIRP-209ENST00000557342 TMEFF1Q8IYR6 380 aa12.78□□□□□ -0.36
SLIRP-209ENST00000557342 FRMD1Q8N878 549 aa12.78□□□□□ -0.36
SLIRP-209ENST00000557342 ATP11CQ8NB49 1132 aa12.78□□□□□ -0.36
SLIRP-209ENST00000557342 FRS2Q8WU20 508 aa12.78□□□□□ -0.36
SLIRP-209ENST00000557342 PEBP4Q96S96 227 aa12.78□□□□□ -0.36
SLIRP-209ENST00000557342 ACE2Q9BYF1 805 aaPredicted RBP12.78□□□□□ -0.36
SLIRP-209ENST00000557342 MTG2Q9H4K7 406 aa12.78□□□□□ -0.36
SLIRP-209ENST00000557342 WSB2Q9NYS7 404 aaPredicted RBP12.78□□□□□ -0.36
SLIRP-209ENST00000557342 INTUQ9ULD6 942 aa12.78□□□□□ -0.36
SLIRP-209ENST00000557342 NEU3Q9UQ49 428 aa12.78□□□□□ -0.36
SLIRP-209ENST00000557342 NCKAP1Q9Y2A7 1128 aa12.78□□□□□ -0.36
SLIRP-209ENST00000557342 FARP1Q9Y4F1 1045 aaPredicted RBP12.78□□□□□ -0.36
SLIRP-209ENST00000557342 USP34Q70CQ2 3546 aa12.77□□□□□ -0.36
SLIRP-209ENST00000557342 BCLAF3A2AJT9 711 aaKnown RBP12.77□□□□□ -0.37
SLIRP-209ENST00000557342 ALOX15BO15296 676 aa12.77□□□□□ -0.37
SLIRP-209ENST00000557342 DAPK3O43293 454 aa12.77□□□□□ -0.37
SLIRP-209ENST00000557342 ADH1BP00325 375 aa12.77□□□□□ -0.37
SLIRP-209ENST00000557342 MPLP40238 635 aa12.77□□□□□ -0.37
SLIRP-209ENST00000557342 HCAR3P49019 387 aa12.77□□□□□ -0.37
SLIRP-209ENST00000557342 LYSMD4Q5XG99 296 aa12.77□□□□□ -0.37
SLIRP-209ENST00000557342 USP30Q70CQ3 517 aa12.77□□□□□ -0.37
SLIRP-209ENST00000557342 CYP2U1Q7Z449 544 aa12.77□□□□□ -0.37
SLIRP-209ENST00000557342 CACUL1Q86Y37 369 aa12.77□□□□□ -0.37
SLIRP-209ENST00000557342 STK40Q8N2I9 435 aa12.77□□□□□ -0.37
SLIRP-209ENST00000557342 TEKT4Q8WW24 435 aa12.77□□□□□ -0.37
SLIRP-209ENST00000557342 OR8D1Q8WZ84 308 aa12.77□□□□□ -0.37
SLIRP-209ENST00000557342 FOXJ1Q92949 421 aa12.77□□□□□ -0.37
SLIRP-209ENST00000557342 ARHGEF2Q92974 986 aaKnown RBP12.77□□□□□ -0.37
SLIRP-209ENST00000557342 TOE1Q96GM8 510 aaKnown RBP12.77□□□□□ -0.37
SLIRP-209ENST00000557342 PANX2Q96RD6 677 aa12.77□□□□□ -0.37
SLIRP-209ENST00000557342 CEP44Q9C0F1 390 aa12.77□□□□□ -0.37
SLIRP-209ENST00000557342 PABPC3Q9H361 631 aaKnown RBP12.77□□□□□ -0.37
SLIRP-209ENST00000557342 ZWILCHQ9H900 591 aa12.77□□□□□ -0.37
SLIRP-209ENST00000557342 VPS45Q9NRW7 570 aa12.77□□□□□ -0.37
SLIRP-209ENST00000557342 SEMA4GQ9NTN9 838 aa12.77□□□□□ -0.37
SLIRP-209ENST00000557342 SPTLC3Q9NUV7 552 aa12.77□□□□□ -0.37
SLIRP-209ENST00000557342 NDFIP2Q9NV92 336 aa12.77□□□□□ -0.37
SLIRP-209ENST00000557342 GPATCH2LQ9NWQ4 482 aa12.77□□□□□ -0.37
SLIRP-209ENST00000557342 OTOGLQ3ZCN5 2332 aa12.76□□□□□ -0.37
SLIRP-209ENST00000557342 FAM186AA6NE01 2351 aa12.76□□□□□ -0.37
SLIRP-209ENST00000557342 ZSCAN5CA6NGD5 496 aaPredicted RBP12.76□□□□□ -0.37
SLIRP-209ENST00000557342 C1QTNF3-AMACRE9PGA6 284 aa12.76□□□□□ -0.37
SLIRP-209ENST00000557342 H3BRJ5 948 aa12.76□□□□□ -0.37
SLIRP-209ENST00000557342 MCF2LO15068 1137 aa12.76□□□□□ -0.37
SLIRP-209ENST00000557342 KDELR3O43731 214 aa12.76□□□□□ -0.37
SLIRP-209ENST00000557342 ZMPSTE24O75844 475 aa12.76□□□□□ -0.37
SLIRP-209ENST00000557342 MT-CO1P00395 513 aa12.76□□□□□ -0.37
SLIRP-209ENST00000557342 ZNF806P0C7X5 589 aa12.76□□□□□ -0.37
SLIRP-209ENST00000557342 C5AR1P21730 350 aa12.76□□□□□ -0.37
SLIRP-209ENST00000557342 SLC8A1P32418 973 aa12.76□□□□□ -0.37
SLIRP-209ENST00000557342 CYLC1P35663 651 aaPredicted RBP12.76□□□□□ -0.37
SLIRP-209ENST00000557342 ACVRL1P37023 503 aa12.76□□□□□ -0.37
SLIRP-209ENST00000557342 ARL4AP40617 200 aa12.76□□□□□ -0.37
SLIRP-209ENST00000557342 RECQLP46063 649 aaPredicted RBP12.76□□□□□ -0.37
SLIRP-209ENST00000557342 SERPINH1P50454 418 aaKnown RBP12.76□□□□□ -0.37
SLIRP-209ENST00000557342 ARF5P84085 180 aa12.76□□□□□ -0.37
SLIRP-209ENST00000557342 ZNF33AQ06730 810 aa12.76□□□□□ -0.37
SLIRP-209ENST00000557342 CST6Q15828 149 aa12.76□□□□□ -0.37
SLIRP-209ENST00000557342 DPYSL2Q16555 572 aa12.76□□□□□ -0.37
SLIRP-209ENST00000557342 CA9Q16790 459 aa12.76□□□□□ -0.37
SLIRP-209ENST00000557342 PARP15Q460N3 678 aa12.76□□□□□ -0.37
SLIRP-209ENST00000557342 PPP6R3Q5H9R7 873 aaPredicted RBP12.76□□□□□ -0.37
SLIRP-209ENST00000557342 SYCP2LQ5T4T6 812 aa12.76□□□□□ -0.37
SLIRP-209ENST00000557342 FAM46CQ5VWP2 391 aa12.76□□□□□ -0.37
SLIRP-209ENST00000557342 LINGO4Q6UY18 593 aa12.76□□□□□ -0.37
SLIRP-209ENST00000557342 RFX8Q6ZV50 586 aa12.76□□□□□ -0.37
SLIRP-209ENST00000557342 CYP4V2Q6ZWL3 525 aaPredicted RBP12.76□□□□□ -0.37
SLIRP-209ENST00000557342 ZNF354CQ86Y25 554 aa12.76□□□□□ -0.37
SLIRP-209ENST00000557342 MMAAQ8IVH4 418 aaKnown RBP12.76□□□□□ -0.37
SLIRP-209ENST00000557342 RHOT2Q8IXI1 618 aa12.76□□□□□ -0.37
SLIRP-209ENST00000557342 KIAA2013Q8IYS2 634 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms