RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 PRDM16Q9HAZ2 1276 aa21.68■■□□□ 1.06
VPS29-206ENST00000549578 EFR3BQ9Y2G0 817 aa21.68■■□□□ 1.06
VPS29-206ENST00000549578 ARHGAP42A6NI28 874 aa21.67■■□□□ 1.06
VPS29-206ENST00000549578 RNF40O75150 1001 aa21.67■■□□□ 1.06
VPS29-206ENST00000549578 PECAM1P16284 738 aaPredicted RBP21.67■■□□□ 1.06
VPS29-206ENST00000549578 KIR2DL1P43626 348 aaPredicted RBP21.67■■□□□ 1.06
VPS29-206ENST00000549578 FZD5Q13467 585 aa21.67■■□□□ 1.06
VPS29-206ENST00000549578 C2orf27AQ580R0 203 aa21.67■■□□□ 1.06
VPS29-206ENST00000549578 CWF19L1Q69YN2 538 aaKnown RBP21.67■■□□□ 1.06
VPS29-206ENST00000549578 LINGO4Q6UY18 593 aa21.67■■□□□ 1.06
VPS29-206ENST00000549578 SYT10Q6XYQ8 523 aa21.67■■□□□ 1.06
VPS29-206ENST00000549578 LEKR1Q6ZMV7 388 aa21.67■■□□□ 1.06
VPS29-206ENST00000549578 RPL10LQ96L21 214 aaKnown RBP21.67■■□□□ 1.06
VPS29-206ENST00000549578 NELL2Q99435 816 aa21.67■■□□□ 1.06
VPS29-206ENST00000549578 LMAN1LQ9HAT1 526 aa21.67■■□□□ 1.06
VPS29-206ENST00000549578 SNX12Q9UMY4 172 aa21.67■■□□□ 1.06
VPS29-206ENST00000549578 STARD13Q9Y3M8 1113 aa21.67■■□□□ 1.06
VPS29-206ENST00000549578 TCRBV7S2A1N4TA0A589 114 aa21.66■■□□□ 1.06
VPS29-206ENST00000549578 CTAGE9A4FU28 777 aa21.66■■□□□ 1.06
VPS29-206ENST00000549578 TIMM44O43615 452 aa21.66■■□□□ 1.06
VPS29-206ENST00000549578 CEP104O60308 925 aa21.66■■□□□ 1.06
VPS29-206ENST00000549578 ZMPSTE24O75844 475 aa21.66■■□□□ 1.06
VPS29-206ENST00000549578 TJP3O95049 919 aa21.66■■□□□ 1.06
VPS29-206ENST00000549578 ATP5BP06576 529 aaKnown RBP21.66■■□□□ 1.06
VPS29-206ENST00000549578 DLDP09622 509 aaKnown RBP21.66■■□□□ 1.06
VPS29-206ENST00000549578 CHRM1P11229 460 aaPredicted RBP21.66■■□□□ 1.06
VPS29-206ENST00000549578 TIE1P35590 1138 aa21.66■■□□□ 1.06
VPS29-206ENST00000549578 STK19P49842 368 aaPredicted RBP21.66■■□□□ 1.06
VPS29-206ENST00000549578 ARF5P84085 180 aa21.66■■□□□ 1.06
VPS29-206ENST00000549578 ECT2LQ008S8 904 aa21.66■■□□□ 1.06
VPS29-206ENST00000549578 GALNT2Q10471 571 aa21.66■■□□□ 1.06
VPS29-206ENST00000549578 PTPRNQ16849 979 aa21.66■■□□□ 1.06
VPS29-206ENST00000549578 FBXO43Q4G163 708 aa21.66■■□□□ 1.06
VPS29-206ENST00000549578 DGKKQ5KSL6 1271 aa21.66■■□□□ 1.06
VPS29-206ENST00000549578 CCDC181Q5TID7 509 aa21.66■■□□□ 1.06
VPS29-206ENST00000549578 Q6ZS52 159 aa21.66■■□□□ 1.06
VPS29-206ENST00000549578 CCDC105Q8IYK2 499 aa21.66■■□□□ 1.06
VPS29-206ENST00000549578 ZNF513Q8N8E2 541 aaPredicted RBP21.66■■□□□ 1.06
VPS29-206ENST00000549578 LRRN4Q8WUT4 740 aa21.66■■□□□ 1.06
VPS29-206ENST00000549578 UCMAQ8WVF2 138 aa21.66■■□□□ 1.06
VPS29-206ENST00000549578 ACDQ96AP0 544 aa21.66■■□□□ 1.06
VPS29-206ENST00000549578 OSBPL9Q96SU4 736 aa21.66■■□□□ 1.06
VPS29-206ENST00000549578 ACOX2Q99424 681 aa21.66■■□□□ 1.06
VPS29-206ENST00000549578 EPHX3Q9H6B9 360 aa21.66■■□□□ 1.06
VPS29-206ENST00000549578 HPCAL4Q9UM19 191 aa21.66■■□□□ 1.06
VPS29-206ENST00000549578 ACTL7AQ9Y615 435 aa21.66■■□□□ 1.06
VPS29-206ENST00000549578 J3KR12 359 aa21.65■■□□□ 1.06
VPS29-206ENST00000549578 KDELR3O43731 214 aa21.65■■□□□ 1.06
VPS29-206ENST00000549578 ASLP04424 464 aa21.65■■□□□ 1.06
VPS29-206ENST00000549578 TGM2P21980 687 aa21.65■■□□□ 1.06
VPS29-206ENST00000549578 SULT2A1Q06520 285 aa21.65■■□□□ 1.06
VPS29-206ENST00000549578 LRRC32Q14392 662 aa21.65■■□□□ 1.06
VPS29-206ENST00000549578 ADAT2Q7Z6V5 191 aaKnown RBP21.65■■□□□ 1.06
VPS29-206ENST00000549578 COG1Q8WTW3 980 aa21.65■■□□□ 1.06
VPS29-206ENST00000549578 MRGPRX3Q96LB0 322 aa21.65■■□□□ 1.06
VPS29-206ENST00000549578 ERVW-1Q9UQF0 538 aa21.65■■□□□ 1.06
VPS29-206ENST00000549578 SIT1Q9Y3P8 196 aa21.65■■□□□ 1.06
VPS29-206ENST00000549578 MYO18AQ92614 2054 aaKnown RBP21.65■■□□□ 1.06
VPS29-206ENST00000549578 MT-CO1P00395 513 aa21.65■■□□□ 1.06
VPS29-206ENST00000549578 GARSP41250 739 aaKnown RBP21.65■■□□□ 1.06
VPS29-206ENST00000549578 KLF1Q13351 362 aaPredicted RBP21.65■■□□□ 1.06
VPS29-206ENST00000549578 ZNF234Q14588 700 aa21.65■■□□□ 1.06
VPS29-206ENST00000549578 SLC13A5Q86YT5 568 aaPredicted RBP21.65■■□□□ 1.06
VPS29-206ENST00000549578 ATPAF2Q8N5M1 289 aa21.65■■□□□ 1.06
VPS29-206ENST00000549578 USP33Q8TEY7 942 aa21.65■■□□□ 1.06
VPS29-206ENST00000549578 P3H4Q92791 437 aa21.65■■□□□ 1.06
VPS29-206ENST00000549578 PBKQ96KB5 322 aa21.65■■□□□ 1.06
VPS29-206ENST00000549578 SP110Q9HB58 689 aa21.65■■□□□ 1.06
VPS29-206ENST00000549578 THAP10Q9P2Z0 257 aaPredicted RBP21.65■■□□□ 1.06
VPS29-206ENST00000549578 IPO11Q9UI26 975 aaKnown RBP21.65■■□□□ 1.06
VPS29-206ENST00000549578 SLCO3A1Q9UIG8 710 aa21.65■■□□□ 1.06
VPS29-206ENST00000549578 SLC25A13Q9UJS0 675 aa21.65■■□□□ 1.06
VPS29-206ENST00000549578 PLA2G4CQ9UP65 541 aa21.65■■□□□ 1.06
VPS29-206ENST00000549578 MUC22E2RYF6 1773 aaPredicted RBP21.64■■□□□ 1.06
VPS29-206ENST00000549578 APOC4-APOC2K7ER74 178 aa21.64■■□□□ 1.05
VPS29-206ENST00000549578 APOC2P02655 101 aa21.64■■□□□ 1.05
VPS29-206ENST00000549578 DCNP07585 359 aaKnown RBP21.64■■□□□ 1.05
VPS29-206ENST00000549578 CASQ1P31415 396 aa21.64■■□□□ 1.05
VPS29-206ENST00000549578 FNDC3BQ53EP0 1204 aaKnown RBP21.64■■□□□ 1.05
VPS29-206ENST00000549578 PAPD7Q5XG87 772 aaKnown RBP21.64■■□□□ 1.05
VPS29-206ENST00000549578 RETSATQ6NUM9 610 aa21.64■■□□□ 1.05
VPS29-206ENST00000549578 PKN3Q6P5Z2 889 aa21.64■■□□□ 1.05
VPS29-206ENST00000549578 ALLCQ8N6M5 410 aa21.64■■□□□ 1.05
VPS29-206ENST00000549578 RPLP0P6Q8NHW5 317 aa21.64■■□□□ 1.05
VPS29-206ENST00000549578 MYO19Q96H55 970 aa21.64■■□□□ 1.05
VPS29-206ENST00000549578 MS4A14Q96JA4 679 aa21.64■■□□□ 1.05
VPS29-206ENST00000549578 OLFM3Q96PB7 478 aa21.64■■□□□ 1.05
VPS29-206ENST00000549578 FAM118BQ9BPY3 351 aa21.64■■□□□ 1.05
VPS29-206ENST00000549578 OSBPL6Q9BZF3 934 aa21.64■■□□□ 1.05
VPS29-206ENST00000549578 PDFQ9HBH1 243 aa21.64■■□□□ 1.05
VPS29-206ENST00000549578 CACNA2D2Q9NY47 1150 aa21.64■■□□□ 1.05
VPS29-206ENST00000549578 WASH3PC4AMC7 463 aa21.63■■□□□ 1.05
VPS29-206ENST00000549578 K7ERQ8 282 aa21.63■■□□□ 1.05
VPS29-206ENST00000549578 ZNF185O15231 689 aa21.63■■□□□ 1.05
VPS29-206ENST00000549578 PI15O43692 258 aa21.63■■□□□ 1.05
VPS29-206ENST00000549578 MAFKO60675 156 aa21.63■■□□□ 1.05
VPS29-206ENST00000549578 PRAMEF11O60813 436 aa21.63■■□□□ 1.05
VPS29-206ENST00000549578 CD160O95971 181 aa21.63■■□□□ 1.05
VPS29-206ENST00000549578 FGGP02679 453 aa21.63■■□□□ 1.05
VPS29-206ENST00000549578 HNRNPLP14866 589 aaKnown RBP eCLIP21.63■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms