RNA–Protein interactions for RNA: ENST00000549162.5

SCAF11-212, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 1 (best) BASIC

Gene SCAF11, Length 3,934 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-212ENST00000549162 MATN3O15232 486 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 H2AFYO75367 372 aaKnown RBP5.02□□□□□ -1.61
SCAF11-212ENST00000549162 TBC1D8O95759 1140 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 CD160O95971 181 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 SERPINC1P01008 464 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 IL2RAP01589 272 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 FAM200BP0CF97 657 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 CYP2B6P20813 491 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 ADSLP30566 484 aaPredicted RBP5.02□□□□□ -1.61
SCAF11-212ENST00000549162 GNL1P36915 607 aaPredicted RBP5.02□□□□□ -1.61
SCAF11-212ENST00000549162 COILP38432 576 aaPredicted RBP5.02□□□□□ -1.61
SCAF11-212ENST00000549162 LIG3P49916 1009 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 EPHB4P54760 987 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 GK3PQ14409 553 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 SETDB1Q15047 1291 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 TRIM60Q495X7 471 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 NXNQ6DKJ4 435 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 P3H4Q92791 437 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 SERPINB12Q96P63 405 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 RAB17Q9H0T7 212 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 SMYD3Q9H7B4 428 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 CLK4Q9HAZ1 481 aaKnown RBP5.02□□□□□ -1.61
SCAF11-212ENST00000549162 RDH14Q9HBH5 336 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 RBM12Q9NTZ6 932 aaKnown RBP5.02□□□□□ -1.61
SCAF11-212ENST00000549162 PCOLCE2Q9UKZ9 415 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 STAP1Q9ULZ2 295 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 PCDHB7Q9Y5E2 793 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 ALG6Q9Y672 507 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 HSFX4A0A1B0GTS1 333 aaPredicted RBP5.02□□□□□ -1.61
SCAF11-212ENST00000549162 HSFX3A0A1B0GWH4 333 aaPredicted RBP5.02□□□□□ -1.61
SCAF11-212ENST00000549162 TARM1B6A8C7 271 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 USP1O94782 785 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 TJP3O95049 919 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 POLR2FP61218 127 aaKnown RBP5.02□□□□□ -1.61
SCAF11-212ENST00000549162 ITKQ08881 620 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 GRIK2Q13002 908 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 SMAD4Q13485 552 aaKnown RBP5.02□□□□□ -1.61
SCAF11-212ENST00000549162 TLR1Q15399 786 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 PRAMEF18Q5VWM3 479 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 CATSPER4Q7RTX7 472 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 RASSF3Q86WH2 238 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 CPA6Q8N4T0 437 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 PRCCQ92733 491 aaPredicted RBP5.02□□□□□ -1.61
SCAF11-212ENST00000549162 GLG1Q92896 1179 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 FUBP1Q96AE4 644 aaKnown RBP5.02□□□□□ -1.61
SCAF11-212ENST00000549162 RAB7BQ96AH8 199 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 ACDQ96AP0 544 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 FNBP1Q96RU3 617 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 EMILIN2Q9BXX0 1053 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 TMEM245Q9H330 911 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 UBE2TQ9NPD8 197 aaPredicted RBP5.02□□□□□ -1.61
SCAF11-212ENST00000549162 TSPAN16Q9UKR8 245 aa5.02□□□□□ -1.61
SCAF11-212ENST00000549162 V9GYY5 206 aaPredicted RBP5.02□□□□□ -1.61
SCAF11-212ENST00000549162 KIF5CO60282 957 aa5.01□□□□□ -1.61
SCAF11-212ENST00000549162 BUB1BO60566 1050 aaPredicted RBP5.01□□□□□ -1.61
SCAF11-212ENST00000549162 ZNF821O75541 412 aaPredicted RBP5.01□□□□□ -1.61
SCAF11-212ENST00000549162 AP2A2O94973 939 aa5.01□□□□□ -1.61
SCAF11-212ENST00000549162 ITGB3P05106 788 aa5.01□□□□□ -1.61
SCAF11-212ENST00000549162 HSPA1AP0DMV8 641 aaKnown RBP5.01□□□□□ -1.61
SCAF11-212ENST00000549162 HSPA1BP0DMV9 641 aaKnown RBP5.01□□□□□ -1.61
SCAF11-212ENST00000549162 ITGB8P26012 769 aa5.01□□□□□ -1.61
SCAF11-212ENST00000549162 ADRA1BP35368 520 aa5.01□□□□□ -1.61
SCAF11-212ENST00000549162 HOXD12P35452 270 aa5.01□□□□□ -1.61
SCAF11-212ENST00000549162 ALDH1A3P47895 512 aa5.01□□□□□ -1.61
SCAF11-212ENST00000549162 ATP4BP51164 291 aa5.01□□□□□ -1.61
SCAF11-212ENST00000549162 TNNC1P63316 161 aa5.01□□□□□ -1.61
SCAF11-212ENST00000549162 CYP4A11Q02928 519 aa5.01□□□□□ -1.61
SCAF11-212ENST00000549162 ANKRD20A8PQ5CZ79 823 aa5.01□□□□□ -1.61
SCAF11-212ENST00000549162 MS4A13Q5J8X5 152 aa5.01□□□□□ -1.61
SCAF11-212ENST00000549162 DBX2Q6ZNG2 339 aa5.01□□□□□ -1.61
SCAF11-212ENST00000549162 ARHGEF18Q6ZSZ5 1173 aa5.01□□□□□ -1.61
SCAF11-212ENST00000549162 USP30Q70CQ3 517 aa5.01□□□□□ -1.61
SCAF11-212ENST00000549162 IQCHQ86VS3 1027 aa5.01□□□□□ -1.61
SCAF11-212ENST00000549162 LSRQ86X29 649 aaPredicted RBP5.01□□□□□ -1.61
SCAF11-212ENST00000549162 DENND1AQ8TEH3 1009 aa5.01□□□□□ -1.61
SCAF11-212ENST00000549162 DUS3LQ96G46 650 aaKnown RBP5.01□□□□□ -1.61
SCAF11-212ENST00000549162 PCED1BQ96HM7 432 aa5.01□□□□□ -1.61
SCAF11-212ENST00000549162 CHAMP1Q96JM3 812 aa5.01□□□□□ -1.61
SCAF11-212ENST00000549162 MRGPRX3Q96LB0 322 aa5.01□□□□□ -1.61
SCAF11-212ENST00000549162 TGS1Q96RS0 853 aaKnown RBP5.01□□□□□ -1.61
SCAF11-212ENST00000549162 TRIM5Q9C035 493 aa5.01□□□□□ -1.61
SCAF11-212ENST00000549162 AASDHPPTQ9NRN7 309 aa5.01□□□□□ -1.61
SCAF11-212ENST00000549162 PAK5Q9P286 719 aa5.01□□□□□ -1.61
SCAF11-212ENST00000549162 EBF1Q9UH73 591 aa5.01□□□□□ -1.61
SCAF11-212ENST00000549162 FZD4Q9ULV1 537 aa5.01□□□□□ -1.61
SCAF11-212ENST00000549162 STK38LQ9Y2H1 464 aa5.01□□□□□ -1.61
SCAF11-212ENST00000549162 SBDSQ9Y3A5 250 aaKnown RBP eCLIP5.01□□□□□ -1.61
SCAF11-212ENST00000549162 PCDHGB2Q9Y5G2 931 aa5.01□□□□□ -1.61
SCAF11-212ENST00000549162 MYBPHLA2RUH7 354 aa5.01□□□□□ -1.61
SCAF11-212ENST00000549162 VSTM5A8MXK1 200 aa5.01□□□□□ -1.61
SCAF11-212ENST00000549162 CYB561D2O14569 222 aa5.01□□□□□ -1.61
SCAF11-212ENST00000549162 SLC9A3R1O14745 358 aaPredicted RBP5.01□□□□□ -1.61
SCAF11-212ENST00000549162 BUB1O43683 1085 aa5.01□□□□□ -1.61
SCAF11-212ENST00000549162 LILRB5O75023 590 aa5.01□□□□□ -1.61
SCAF11-212ENST00000549162 ZBED1O96006 694 aa5.01□□□□□ -1.61
SCAF11-212ENST00000549162 CBSLP0DN79 551 aa5.01□□□□□ -1.61
SCAF11-212ENST00000549162 CBSP35520 551 aa5.01□□□□□ -1.61
SCAF11-212ENST00000549162 SKIV2L2P42285 1042 aaKnown RBP5.01□□□□□ -1.61
SCAF11-212ENST00000549162 MTHFRP42898 656 aa5.01□□□□□ -1.61
SCAF11-212ENST00000549162 MAGEA1P43355 309 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms